Files in shashidhar22/LymphoSeq2

Analyze high-throughput sequencing of T and B cell receptors

.Rbuildignore

.github/.gitignore

.github/workflows/R-CMD-check.yaml

.github/workflows/pkgdown.yaml

.gitignore

DESCRIPTION

NAMESPACE

R/LymphoSeq2-package.R R/alignSeq.R R/chordDiagramVDJ.R R/clonalRelatedness.R R/clonality.R R/cloneTrack.R R/commonSeqs.R R/commonSeqsBar.R R/commonSeqsPlot.R R/commonSeqsVenn.R R/countKmer.R R/data.R R/differentialAbundance.R R/exportFasta.R R/geneFreq.R R/getLorenz.R R/phyloTree.R R/plotAlignment.R R/plotLorenzCurve.R R/plotPairwise.R R/plotPairwiseNetwork.R R/plotTrack.R R/plotTrackSingular.R R/rarefactionCurve.R R/read10x.R R/readGliphTable.R R/readImmunoSeq.R R/readProductiveSeq.R R/removeSeq.R R/runINext.R R/scoringMatrix.R R/searchDB.R R/searchPublished.R R/searchSeq.R R/seqMatrix.R R/topFreq.R R/topSeqs.R R/topSeqsPlot.R R/uniqueSeqs.R README.Rmd README.md

_pkgdown.yml

data/antigen_db.rda

data/prevalenceTRB.rda

data/publishedTRB.rda

docs/404.html

docs/authors.html

docs/deps/bootstrap-5.1.0/bootstrap.bundle.min.js

docs/deps/bootstrap-5.1.0/bootstrap.bundle.min.js.map

docs/deps/bootstrap-5.1.0/bootstrap.min.css

docs/deps/data-deps.txt

docs/deps/jquery-3.6.0/jquery-3.6.0.js

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docs/index.html

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docs/pkgdown.js

docs/pkgdown.yml

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tests/testthat/test_data/015V06013979_CFAR.tsv

tests/testthat/test_data/015V12001549_CFAR.tsv

tests/testthat/test_data/015V12001685_CFAR_R.tsv

tests/testthat/test_data/015V12003105_CFAR.tsv

tests/testthat/test_data/gliph/015V04005438_CFAR.tsv

tests/testthat/test_data/gliph/015V05003835_CFAR.tsv

tests/testthat/test_data/prevalenceTRB.rda

tests/testthat/test_genefreq.R tests/testthat/test_gliph.R tests/testthat/test_prodseq.R tests/testthat/test_reader.R tests/testthat/test_searchseq.R tests/testthat/test_topseq.R vignettes/LymphoSeq2.Rmd

workspace.code-workspace

shashidhar22/LymphoSeq2 documentation built on Jan. 16, 2024, 4:29 a.m.