inst/doc/smt-vignette.R

In sheng-liu/smt: Single Molecule Tracking

## ----eval=FALSE----------------------------------------------------------
#  ## load the library
#  library(smt)
#  
#  
#  ## specify folder location
#  
#  # example file with the pacakge
#  SWR1=system.file("extdata","SWR1",package="smt")
#  HTZ1=system.file("extdata","HTZ1",package="smt")
#  
#  # local files
#  SWR1="/Volumes/wulab/Users/ranjana/Data/2015-11-09/SWR1_Halo"
#  
#  # files on remoote dm11 server shared folder
#  SWR1="/groups/wu/wulab/Users/ranjana/Data/2015-11-09/SWR1_Halo"
#  
#  
#  ## create master tracklist
#  comp=compareFolder(SWR1,HTZ1)
#  
#  
#  ## compute MSD, Dinst, CDF, dwellTime
#  msd(comp,dt=6,summarize=T,filter=T,plot=T,output=T)
#  
#  Dinst(comp,dt=6,filter=T,plot=T,output=T)
#  
#  CDF(comp,dt=6)
#  
#  dwellTime(comp,plot=T,output=T)
#  
#  
#  ## use ?function for help
#  ?msd
#  
#