react171116: KEGG REACTION data coverted to data.frame.

Description Usage Format References Examples

Description

The data from the KEGG data base of KEGG REACTION(11/16/17). Those of 7186 entries which, mapped on PATHWAY map. This data colected from KEGG using KEGG API.

Usage

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Format

An object of data frame with 25207 rows and 10 columns(at 11/16/17), named "ENTRY", "NAME", "DEFINITION", "EQUATION", "REMARK", "COMMENT", "RCLASS", "ENZYME", "PATHWAY", "MODULE", "ORTHOLOGY" "DBLINKS" "REFERENCE".

References

Rpubs

Examples

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data(react171116)
react171116[1:3, c("ENTRY","EQUATION")]

# # extract formula
# library(dplyr)
# react171116 %>%
#   mutate(.,
#         r_ids = gsub("\\+", ";",
#                   gsub("[ ]+", "",
#                       sapply(strsplit(.$EQUATION, split = "<=>"), "[", 2))),
#         l_ids = gsub("\\+", ";",
#                   gsub("[ ]+", "",
#                       sapply(strsplit(.$EQUATION, split = "<=>"), "[", 1)))
#         ) %>%
#         select(l_ids, r_ids)

shkonishi/rskodata documentation built on Jan. 16, 2019, 5:37 p.m.