Files in shlienlab/ShlienLab.Core.SSM
Simple Somatic Mutation (SSM) library.

.Rbuildignore
.Rhistory
.Rproj.user/8CA59FEE/cpp-definition-cache
.Rproj.user/8CA59FEE/pcs/debug-breakpoints.pper
.Rproj.user/8CA59FEE/pcs/files-pane.pper
.Rproj.user/8CA59FEE/pcs/source-pane.pper
.Rproj.user/8CA59FEE/pcs/windowlayoutstate.pper
.Rproj.user/8CA59FEE/pcs/workbench-pane.pper
.Rproj.user/8CA59FEE/persistent-state
.Rproj.user/8CA59FEE/rmd-outputs
.Rproj.user/8CA59FEE/saved_source_markers
.Rproj.user/8CA59FEE/sdb/per/t/206B90AA
.Rproj.user/8CA59FEE/sdb/per/t/586002E5
.Rproj.user/8CA59FEE/sdb/per/t/6699F9C9
.Rproj.user/8CA59FEE/sdb/per/t/70647DA9
.Rproj.user/8CA59FEE/sdb/per/t/97C7E76B
.Rproj.user/8CA59FEE/sdb/per/t/A91B1712
.Rproj.user/8CA59FEE/sdb/per/t/A9ECAF3
.Rproj.user/8CA59FEE/sdb/per/t/C3BCAF16
.Rproj.user/8CA59FEE/sdb/per/t/F6364C8
.Rproj.user/8CA59FEE/sdb/per/u/6C4DB891
.Rproj.user/8CA59FEE/sdb/per/u/7EFC542C
.Rproj.user/8CA59FEE/sdb/per/u/84E40B6E
.Rproj.user/8CA59FEE/sdb/prop/269DC50C
.Rproj.user/8CA59FEE/sdb/prop/369D4E6F
.Rproj.user/8CA59FEE/sdb/prop/3BF1B6B5
.Rproj.user/8CA59FEE/sdb/prop/440E4968
.Rproj.user/8CA59FEE/sdb/prop/473A400E
.Rproj.user/8CA59FEE/sdb/prop/4B2654E8
.Rproj.user/8CA59FEE/sdb/prop/4DEEFE12
.Rproj.user/8CA59FEE/sdb/prop/553FFF8C
.Rproj.user/8CA59FEE/sdb/prop/556EBF9C
.Rproj.user/8CA59FEE/sdb/prop/597A9BE9
.Rproj.user/8CA59FEE/sdb/prop/5A347B52
.Rproj.user/8CA59FEE/sdb/prop/ACEE9526
.Rproj.user/8CA59FEE/sdb/prop/AE4F7667
.Rproj.user/8CA59FEE/sdb/prop/BDA1D94
.Rproj.user/8CA59FEE/sdb/prop/CCEA06FE
.Rproj.user/8CA59FEE/sdb/prop/D0D310B6
.Rproj.user/8CA59FEE/sdb/prop/EDAD0C4F
.Rproj.user/8CA59FEE/sdb/prop/F6530A79
.Rproj.user/8CA59FEE/sdb/prop/INDEX
.Rproj.user/8CA59FEE/session-persistent-state
.Rproj.user/8CA59FEE/unsaved-notebooks/6C4DB891/1/chunks.json
.Rproj.user/8CA59FEE/unsaved-notebooks/6C4DB891/1/csetup_chunk/000002.csv
.Rproj.user/8CA59FEE/unsaved-notebooks/84E40B6E/1/c6uypgficvfnw/000006.metadata
.Rproj.user/8CA59FEE/unsaved-notebooks/84E40B6E/1/c6uypgficvfnw/000006.png
.Rproj.user/8CA59FEE/unsaved-notebooks/84E40B6E/1/c6uypgficvfnw/000006.snapshot
.Rproj.user/8CA59FEE/unsaved-notebooks/84E40B6E/1/chunks.json
.Rproj.user/8CA59FEE/unsaved-notebooks/84E40B6E/1/cj9asyt1oqyry/000010.csv
.Rproj.user/8CA59FEE/unsaved-notebooks/84E40B6E/1/cj9asyt1oqyry/000011.error
.Rproj.user/8CA59FEE/unsaved-notebooks/84E40B6E/1/csetup_chunk/000002.csv
.Rproj.user/8CA59FEE/unsaved-notebooks/84E40B6E/1/cvc9p7fn2kz14/000006.csv
.Rproj.user/8CA59FEE/unsaved-notebooks/84E40B6E/1/cvc9p7fn2kz14/000007.error
.Rproj.user/8CA59FEE/unsaved-notebooks/84E40B6E/1/czf6stsikuhry/000002.csv
.Rproj.user/8CA59FEE/unsaved-notebooks/84E40B6E/1/czf6stsikuhry/000003.error
.Rproj.user/shared/notebooks/9FF1858C-mutect_vs_mutect/1/8CA59FEE/chunks.json
.Rproj.user/shared/notebooks/9FF1858C-mutect_vs_mutect/1/s/c6534whogv11z/000004.html
.Rproj.user/shared/notebooks/9FF1858C-mutect_vs_mutect/1/s/c6534whogv11z/000004.metadata
.Rproj.user/shared/notebooks/9FF1858C-mutect_vs_mutect/1/s/c7du2569wy6vl/000002.csv
.Rproj.user/shared/notebooks/9FF1858C-mutect_vs_mutect/1/s/cc6uhdt33jfxs/000006.csv
.Rproj.user/shared/notebooks/9FF1858C-mutect_vs_mutect/1/s/chunks.json
.Rproj.user/shared/notebooks/9FF1858C-mutect_vs_mutect/1/s/cn2bxvzb3damg/000007.csv
.Rproj.user/shared/notebooks/9FF1858C-mutect_vs_mutect/1/s/cn2bxvzb3damg/000008.html
.Rproj.user/shared/notebooks/9FF1858C-mutect_vs_mutect/1/s/cn2bxvzb3damg/000008.metadata
.Rproj.user/shared/notebooks/9FF1858C-mutect_vs_mutect/1/s/co2j9cquoyvt6/000005.html
.Rproj.user/shared/notebooks/9FF1858C-mutect_vs_mutect/1/s/co2j9cquoyvt6/000005.metadata
.Rproj.user/shared/notebooks/9FF1858C-mutect_vs_mutect/1/s/cqhjl5idhifvi/000002.csv
.Rproj.user/shared/notebooks/9FF1858C-mutect_vs_mutect/1/s/csetup_chunk/000002.csv
.Rproj.user/shared/notebooks/9FF1858C-mutect_vs_mutect/1/s/cvltvxjvxamzv/000002.csv
.Rproj.user/shared/notebooks/paths
DESCRIPTION
NAMESPACE
R/annotate.mutect2.data.R R/create_final_filtered_dataframe.R R/filter_indel.R R/filter_snv.R R/get.mutect2.annotated.header.R R/get.mutect2.data.R
ShlienLab.Core.SSM.Rproj
exec/run_ssm_standard_filters.R man/annotate.mutect2.data.Rd man/create_final_filtered_dataframe.Rd man/filter_indel.Rd man/filter_snv.Rd man/get.mutect2.annotated.header.Rd man/get.mutect2.data.Rd
shlienlab/ShlienLab.Core.SSM documentation built on May 20, 2019, 5:27 p.m.