getGapPenalty: Calculates gap penalty

Description Usage Arguments Value

Description

Takes a matrix, vectorize it and find the given quantile. This value is given out as gap penalty.

Usage

1
2
3
getGapPenalty(s, gapQuantile, type = c("dotProductMasked", "dotProduct",
  "cosineAngle", "cosine2Angle", "euclideanDist", "covariance",
  "correlation"))

Arguments

s

A numeric matrix

Value

The gap penalty for dynamic programming


shubham1637/DIAlignR documentation built on May 8, 2019, 8:12 a.m.