Man pages for shubham1637/DIAlignment
Dynamic programming based alignment of MS2 chromatograms

calcNoBeefMaskGlobalHard constraining of similarity matrix outside of global fit...
calcNoBeefMaskGlobalWSlopeSoft constraining of similarity matrix outside of global fit...
constrainSimilarityHard constraining of similarity matrix outside of global fit...
getAffineAlignObjCreates affine alignment object
getAlignmentComputes indices of row and column of maximum scored...
getAlignmentPathOutput matrix with alignment path represented as binary-hot...
getGapPenaltyCalculates gap penalty
getLinearfitcalculates linear fit between RT of two runs
getLOESSfitcalculates LOESS fit between RT of two runs
getSimilarityMatrixcalculates similarity matrix between two chromatogram groups
mapIdxToTimeEstablishes mapping back from index to time
NeedleObjAffine-classAn S4 object to group matrices produced by the alignmnet
shubham1637/DIAlignment documentation built on Oct. 14, 2018, 9:16 p.m.