Files in sigven/OncoVarReporter
Generation of precision oncology reports for cancer genomes

.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
OncoVarReporter.Rproj
R/utils.R README.md
data-raw/cbmdb.biomarkers.tsv
data-raw/civic.biomarkers.tsv
data-raw/clinvar.tsv.gz
data-raw/data.R
data-raw/docm_processed.tsv
data-raw/gene.transcript.onco_xref.GRCh37.tsv.gz
data-raw/kegg.links.pr_gene.tsv
data-raw/pfam.domains.tsv.gz
data-raw/signatures_aetiologies.tsv
data-raw/uniprot.features.tsv.gz
data/cbmdb_biomarkers.rda
data/civic_biomarkers.rda
data/clinvar.rda
data/docm_literature.rda
data/ensembl_genes_gr.rda
data/gene_xref.rda
data/kegg_disease.rda
data/kegg_gene_pathway_links.rda
data/kegg_pathway.rda
data/kegg_pathway_disease.rda
data/kegg_pathway_gene.rda
data/pcgr_all_annotation_columns.rda
data/pcgr_tsv_tiered_columns.rda
data/pfam_domains.rda
data/seqinfo_hg19.rda
data/signatures_aetiologies.rda
data/swissprot_features.rda
data/tier1_tags_display.rda
data/tier2_tags_display.rda
data/tier3_tags_display.rda
data/tier4_tags_display.rda
data/tier5_tags_display.rda
inst/templates/QC_coverage.Rmd
inst/templates/bibliography.bib
inst/templates/biomarker_summary.Rmd inst/templates/cnv_plot.Rmd inst/templates/cnv_report_biomarkers.Rmd inst/templates/cnv_report_oncogene_gain.Rmd inst/templates/cnv_report_segments_nondiploid.Rmd inst/templates/cnv_report_tsgene_loss.Rmd inst/templates/data_sources.Rmd inst/templates/limited_signature_data.Rmd inst/templates/mutational_signature.Rmd inst/templates/report.Rmd inst/templates/report_cellline.Rmd inst/templates/report_strong.Rmd inst/templates/report_tumor_only.Rmd inst/templates/tier1.Rmd inst/templates/tier2.Rmd inst/templates/tier3.Rmd inst/templates/tier4.Rmd inst/templates/tier5.Rmd man/add_pfam_domain_links.Rd man/add_read_support.Rd man/add_swissprot_feature_descriptions.Rd man/annotate_variant_link.Rd man/assign_poplevel_frequency.Rd man/assign_poplevel_frequency_class.Rd man/cnv_segment_annotation.Rd man/filter_db_germline_variants.Rd man/generate_biomarker_tsv.Rd man/generate_pcg_report.Rd man/generate_report_data.Rd man/generate_tier_tsv.Rd man/get_calls.Rd man/get_clinical_associations_civic_cbmdb.Rd man/hello.Rd man/plot_call_statistics.Rd man/postprocess_vranges_info.Rd man/signature_contributions_single_sample.Rd man/tier_to_maf.Rd
sigven/OncoVarReporter documentation built on May 26, 2017, 9:08 a.m.