Files in smorabit/scWGCNA

hdWGCNA

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.github/ISSUE_TEMPLATE/bug-error-report.md .github/ISSUE_TEMPLATE/feature_request.md .github/ISSUE_TEMPLATE/question.md .github/PULL_REQUEST_TEMPLATE/PULL_REQUEST_TEMPLATE.md

DESCRIPTION

LICENSE

LICENSE.md

NAMESPACE

NEWS.md R/ConstructNetwork.R R/DMEs.R R/Enrichment.R R/FindMajorIsoforms.R R/Metaspots.R R/ModuleConnectivity.R R/ModuleEigengenes.R R/ModulePreservation.R R/ModuleTraitCorrelation.R R/Motifs.R R/ProjectModules.R R/Pseudobulk.R R/ReassignModules.R R/RunModuleUMAP.R R/SelectNetworkGenes.R R/SetupForWGCNA.R R/SoftPowers.R R/getters_and_setters.R R/helpers.R R/metacells.R R/plotting.R R/pseudotime.R README.md

_pkgdown.yml

backup/test-ConstructNetwork.R backup/test-Metacells.R backup/test-SetDatExpr.R backup/test-SetupForWGCNA.R backup/test-SoftPowers.R

data/test_seurat.rda

docs/.DS_Store

docs/404.html

docs/LICENSE-text.html

docs/LICENSE.html

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docs/articles/.DS_Store

docs/articles/ST_basics.html

docs/articles/basic_tutorial.html

docs/articles/consensus_wgcna.html

docs/articles/customization.html

docs/articles/differential_MEs.html

docs/articles/encirhment_analysis.html

docs/articles/enrichment_analysis.html

docs/articles/figures/.DS_Store

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docs/articles/figures/ST_basics/.DS_Store

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docs/articles/figures/basic_tutorial/.DS_Store

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docs/articles/figures/network_vis/.DS_Store

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images/.DS_Store

inst/CITATION

inst/pkgdown.yml

man/AvgModuleExpr.Rd man/BinPseudotime.Rd man/CheckSeurat5.Rd man/CheckWGCNAName.Rd man/ComputeModuleEigengene.Rd man/ConstructMetacells.Rd man/ConstructMetaspots.Rd man/ConstructNetwork.Rd man/ConstructPseudobulk.Rd man/DimPlotMetacells.Rd man/DoHubGeneHeatmap.Rd man/EnrichrBarPlot.Rd man/EnrichrDotPlot.Rd man/FindAllDMEs.Rd man/FindDMEs.Rd man/FindMajorIsoforms.Rd man/GetActiveWGCNA.Rd man/GetActiveWGCNAName.Rd man/GetAvgModuleExpr.Rd man/GetDatExpr.Rd man/GetEnrichrTable.Rd man/GetHubGenes.Rd man/GetMELoadings.Rd man/GetMEs.Rd man/GetMetacellObject.Rd man/GetModulePreservation.Rd man/GetModuleScores.Rd man/GetModuleTraitCorrelation.Rd man/GetModuleUMAP.Rd man/GetModules.Rd man/GetMotifMatrix.Rd man/GetMotifOverlap.Rd man/GetMotifScores.Rd man/GetMotifTargets.Rd man/GetMotifs.Rd man/GetMultiExpr.Rd man/GetNetworkData.Rd man/GetPFMList.Rd man/GetPowerTable.Rd man/GetTOM.Rd man/GetWGCNAGenes.Rd man/GetWGCNAParams.Rd man/HubGeneNetworkPlot.Rd man/MetacellsByGroups.Rd man/MetaspotsByGroups.Rd man/ModuleConnectivity.Rd man/ModuleCorrNetwork.Rd man/ModuleCorrelogram.Rd man/ModuleEigengenes.Rd man/ModuleExprScore.Rd man/ModuleFeaturePlot.Rd man/ModuleNetworkPlot.Rd man/ModulePreservation.Rd man/ModuleTFNetwork.Rd man/ModuleTraitCorrelation.Rd man/ModuleUMAPPlot.Rd man/MotifOverlapBarPlot.Rd man/MotifScan.Rd man/MotifTargetScore.Rd man/NormalizeMetacells.Rd man/OverlapBarPlot.Rd man/OverlapDotPlot.Rd man/OverlapModulesDEGs.Rd man/OverlapModulesMotifs.Rd man/PlotDMEsLollipop.Rd man/PlotDMEsVolcano.Rd man/PlotDendrogram.Rd man/PlotKMEs.Rd man/PlotLollipop.Rd man/PlotModulePreservation.Rd man/PlotModuleTraitCorrelation.Rd man/PlotModuleTrajectory.Rd man/PlotSoftPowers.Rd man/ProjectModules.Rd man/ReassignModules.Rd man/ResetModuleColors.Rd man/ResetModuleNames.Rd man/RunEnrichr.Rd man/RunHarmonyMetacells.Rd man/RunModuleUMAP.Rd man/RunPCAMetacells.Rd man/RunUMAPMetacells.Rd man/ScaleMetacells.Rd man/SelectNetworkGenes.Rd man/SetActiveWGCNA.Rd man/SetAvgModuleExpr.Rd man/SetDatExpr.Rd man/SetEnrichrTable.Rd man/SetMELoadings.Rd man/SetMEs.Rd man/SetMetacellObject.Rd man/SetModulePreservation.Rd man/SetModuleScores.Rd man/SetModuleTraitCorrelation.Rd man/SetModuleUMAP.Rd man/SetModules.Rd man/SetMotifMatrix.Rd man/SetMotifOverlap.Rd man/SetMotifScores.Rd man/SetMotifTargets.Rd man/SetMotifs.Rd man/SetMultiExpr.Rd man/SetNetworkData.Rd man/SetPFMList.Rd man/SetPowerTable.Rd man/SetWGCNAGenes.Rd man/SetWGCNAParams.Rd man/SetupForWGCNA.Rd man/TestSoftPowers.Rd man/TestSoftPowersConsensus.Rd man/TransferModuleGenome.Rd man/check_inputs.Rd man/corSparse.Rd

man/figures/logo.png

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tests/testthat.R tests/testthat/test-ConstructNetwork.R tests/testthat/test-Metacells.R tests/testthat/test-ModuleEigengenes.R tests/testthat/test-SetDatExpr.R tests/testthat/test-SetupForWGCNA.R tests/testthat/test-SoftPowers.R vignettes/ST_basics.Rmd vignettes/basic_tutorial.Rmd vignettes/consensus_wgcna.Rmd vignettes/customization.Rmd vignettes/differential_MEs.Rmd vignettes/enrichment_analysis.Rmd vignettes/hdWGCNA.Rmd vignettes/isoform_pbmcs.Rmd vignettes/module_preservation.Rmd vignettes/module_trait_correlation.Rmd vignettes/motif_analysis.Rmd vignettes/network_visualizations.Rmd vignettes/other_metacells.Rmd vignettes/projecting_modules.Rmd vignettes/projecting_modules_cross.Rmd vignettes/pseudobulk.Rmd vignettes/pseudotime.Rmd vignettes/sctransform.Rmd

smorabit/scWGCNA documentation built on April 4, 2024, 10:32 a.m.