In snjy9182/smt: Single Molecule Tracking

## load the library
library(smt)


## specify folder location

# example file with the pacakge
SWR1=system.file("extdata","SWR1",package="smt")
HTZ1=system.file("extdata","HTZ1",package="smt")

# local files
SWR1="/Volumes/wulab/Users/ranjana/Data/2015-11-09/SWR1_Halo"

# files on remoote dm11 server shared folder
SWR1="/groups/wu/wulab/Users/ranjana/Data/2015-11-09/SWR1_Halo"


## create master tracklist
comp=compareFolder(SWR1,HTZ1)


## compute MSD, Dinst, CDF, dwellTime
msd(comp,dt=6,summarize=T,filter=T,plot=T,output=T)

Dinst(comp,dt=6,filter=T,plot=T,output=T)

CDF(comp,dt=6)

dwellTime(comp,plot=T,output=T)


## use ?function for help
?msd

snjy9182/smt documentation built on May 24, 2019, 7:19 a.m.