# Period examples from http://www.math.wisc.edu/~anderson/605F11/Notes/StochBioChapter3.pdf
#library(markovchain)
mcPeriodic<-new("markovchain", states=c("0","1","2"), transitionMatrix=
matrix(c(0,1,0,
0,0,1,
1,0,0),nrow=3, byrow=TRUE, dimnames=list(c("0","1","2"),
c("0","1","2"))
))
myMatr<-matrix(c(0 , 0 , 1/2 , 1/4 , 1/4 , 0 , 0,
0 , 0 , 1/3 , 0 , 2/3, 0 , 0 ,
0 , 0 , 0 , 0 , 0 , 1/3 , 2/3 ,
0 , 0 , 0 , 0 , 0 , 1/2 , 1/2 ,
0 , 0 , 0 , 0 , 0 , 3/4 , 1/4 ,
1/2, 1/2 , 0 , 0 , 0 , 0 , 0 ,
1/4, 3/4 , 0 , 0 , 0 , 0 , 0),byrow=TRUE, nrow = 7)
mcPeriodic2<-as(myMatr, "markovchain")
mcAperiodic<-new("markovchain", states=c("0","1","2","3","4"), transitionMatrix=
matrix(c(1/2,1/2,0,0,0,
1/2,0,1/2,0,0,
0,1/2,0,1/2,0,
0,0,1/2,0,1/2,
0,0,0,1,0),nrow=5, byrow=TRUE, dimnames=list(c("0","1","2","3","4"),
c("0","1","2","3","4"))
))
####end creating DTMC
context("Basic DTMC proprieties")
test_that("States are those that should be", {
expect_equal(period(mcPeriodic),3)
expect_equal(period(mcPeriodic2),3)
expect_equal(period(mcAperiodic),1)
})
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