API for stan-dev/rstanarm
Bayesian Applied Regression Modeling via Stan
| Global functions | |
|---|---|
| .aux_name | Source code |
| .cnms | Source code |
| .cnms.stanmvreg | Source code |
| .cnms.stanreg | Source code |
| .flist | Source code |
| .flist.stanmvreg | Source code |
| .flist.stanreg | Source code |
| .format_pars | Source code |
| .glmer_check | Source code |
| .ignore_nreps | Source code |
| .ll_Gamma_i | Source code |
| .ll_beta_i | Source code |
| .ll_binomial_i | Source code |
| .ll_clogit_i | Source code |
| .ll_gaussian_i | Source code |
| .ll_inverse.gaussian_i | Source code |
| .ll_jm | Source code |
| .ll_long | Source code |
| .ll_neg_binomial_2_i | Source code |
| .ll_nlmer_i | Source code |
| .ll_poisson_i | Source code |
| .ll_polr_i | Source code |
| .ll_survival | Source code |
| .loo_comparison | Source code |
| .max_treedepth | Source code |
| .median_and_madsd | Source code |
| .mu | Source code |
| .mu_beta | Source code |
| .onAttach | Source code |
| .onLoad | Source code |
| .p | Source code |
| .phi_beta | Source code |
| .pp_Gamma | Source code |
| .pp_beta | Source code |
| .pp_binomial | Source code |
| .pp_clogit | Source code |
| .pp_data | Source code |
| .pp_data_jm | Source code |
| .pp_data_mer | Source code |
| .pp_data_mer_x | Source code |
| .pp_data_mer_z | Source code |
| .pp_data_nlmer | Source code |
| .pp_data_offset | Source code |
| .pp_gaussian | Source code |
| .pp_inverse.gaussian | Source code |
| .pp_neg_binomial_2 | Source code |
| .pp_poisson | Source code |
| .pp_polr | Source code |
| .ppc_args | Source code |
| .ppc_function_name | Source code |
| .ppc_groupvar | Source code |
| .ppc_y_and_yrep | Source code |
| .print_covariance_prior | Source code |
| .print_scalar_prior | Source code |
| .print_vector_prior | Source code |
| .printfr | Source code |
| .rename_aux | Source code |
| .rename_e_aux | Source code |
| .rinvGauss | Source code |
| .sample_indices | Source code |
| .set_nreps | Source code |
| .stanmvreg_check | Source code |
| .stanreg_list | Source code |
| .stopifnot_valid_objects | Source code |
| .support_deprecated_prior_options | Source code |
| .validate_polr_x | Source code |
| .weighted | Source code |
| .xdata | Source code |
| .xdata_beta | Source code |
| .zdata_beta | Source code |
| R2 | Source code |
| STOP_arg | Source code |
| STOP_arg_required_for_stanmvreg | Source code |
| STOP_binomial | Source code |
| STOP_combination_not_allowed | Source code |
| STOP_dynpred | Source code |
| STOP_if_stanmvreg | Source code |
| STOP_jm_only | Source code |
| STOP_no_draws | Source code |
| STOP_no_var | Source code |
| STOP_not_VB | Source code |
| STOP_not_optimizing | Source code |
| STOP_sampling_only | Source code |
| STOP_stan_mvmer | Source code |
| VarCorr.stanreg | Source code |
| `%ORifINF%` | Source code |
| `%ORifNULL%` | Source code |
| allow_special_parnames | Source code |
| append_mvmer_famlink | Source code |
| append_predvars_attribute | Source code |
| array1D_check | Source code |
| array2list | Source code |
| array_else_double | Source code |
| as.array.stanreg | Source code |
| as.data.frame.stanreg | Source code |
| as.data.frame.summary.stanreg | Source code |
| as.matrix.stanreg | Source code |
| as_draws.stanreg | Source code |
| as_draws_array.stanreg | Source code |
| as_draws_df.stanreg | Source code |
| as_draws_list.stanreg | Source code |
| as_draws_matrix.stanreg | Source code |
| as_draws_rvars.stanreg | Source code |
| autoscale_prior | Source code |
| b_names | Source code |
| b_names_M | Source code |
| bayes_R2.stanreg | Source code |
| beta_fam | Source code |
| beta_names | Source code |
| beta_phi_fam | Source code |
| binom_y_prop | Source code |
| broadcast_prior | Source code |
| cauchy | Source code |
| center_x | Source code |
| chain_id_for_loo | Source code |
| check_constant_vars | Source code |
| check_for_aux | Source code |
| check_for_intercept | Source code |
| check_id_list | Source code |
| check_id_var | Source code |
| check_if_rescaled | Source code |
| check_intercept_type | Source code |
| check_missing_pars | Source code |
| check_order_of_assoc_interactions | Source code |
| check_pp_ids | Source code |
| check_reTrms | Source code |
| check_response_real | Source code |
| check_rhats | Source code |
| check_stanfit | Source code |
| check_submodelopt2 | Source code |
| check_submodelopt3 | Source code |
| check_vars_are_included | Source code |
| check_weights | Source code |
| clogit_linpred_transform | Source code |
| coef.stanmvreg | Source code |
| coef.stanreg | Source code |
| coef_mer | Source code |
| collapse_within_groups | Source code |
| collapse_within_groups.default | Source code |
| collapse_within_groups.matrix | Source code |
| collect_nms | Source code |
| collect_pars | Source code |
| compare_models | Source code |
| confint.stanreg | Source code |
| convert_null | Source code |
| decov | Source code |
| default_prior_coef | Source code |
| default_prior_intercept | Source code |
| default_stan_control | Source code |
| dgumbel | Source code |
| dirichlet | Source code |
| dmt | Source code |
| drop_attributes | Source code |
| drop_empty_levels | Source code |
| drop_intercept | Source code |
| drop_redundant_dims | Source code |
| evaluate_Sigma | Source code |
| evaluate_log_basehaz | Source code |
| evaluate_log_survival | Source code |
| evaluate_log_survival.default | Source code |
| evaluate_log_survival.matrix | Source code |
| exclude_lp_and_ppd | Source code |
| exponential | Source code |
| extract_pars | Source code |
| fac2bin | Source code |
| fake_y_for_prior_PD | Source code |
| family.stanmvreg | Source code |
| family.stanreg | Source code |
| family_plus_link | Source code |
| fetch | Source code |
| fetch_ | Source code |
| fetch_array | Source code |
| fitted.stanmvreg | Source code |
| fitted.stanreg | Source code |
| fixef.stanmvreg | Source code |
| fixef.stanreg | Source code |
| formula.stanreg | Source code |
| formula_string | Source code |
| generate_init_function | Source code |
| get_M | Source code |
| get_Sigma_nms | Source code |
| get_basic_grp_info | Source code |
| get_common_cnms | Source code |
| get_common_flevels | Source code |
| get_element | Source code |
| get_extra_grp_info | Source code |
| get_extrapolation_control | Source code |
| get_idx_array | Source code |
| get_m_stub | Source code |
| get_model_data | Source code |
| get_num_assoc_pars | Source code |
| get_nvars_for_hs | Source code |
| get_quadpoints | Source code |
| get_scale_value | Source code |
| get_stub | Source code |
| get_time_seq | Source code |
| get_x | Source code |
| get_x.default | Source code |
| get_x.gamm4 | Source code |
| get_x.lmerMod | Source code |
| get_x.stanmvreg | Source code |
| get_y | Source code |
| get_y.default | Source code |
| get_y.stanmvreg | Source code |
| get_y_new | Source code |
| get_z | Source code |
| get_z.lmerMod | Source code |
| get_z.stanmvreg | Source code |
| grep_for_pars | Source code |
| groups | Source code |
| handle_assocmod | Source code |
| handle_basehaz | Source code |
| handle_cov_prior | Source code |
| handle_e_mod | Source code |
| handle_glm_prior | Source code |
| handle_weights | Source code |
| handle_y_mod | Source code |
| has_outcome_variable | Source code |
| hash_y | Source code |
| hs | Source code |
| hs_plus | Source code |
| invlogit | Source code |
| is.beta | Source code |
| is.binomial | Source code |
| is.gamma | Source code |
| is.gaussian | Source code |
| is.ig | Source code |
| is.jm | Source code |
| is.lmer | Source code |
| is.mer | Source code |
| is.mvmer | Source code |
| is.nb | Source code |
| is.nlmer | Source code |
| is.poisson | Source code |
| is.stanjm | Source code |
| is.stanjm_list | Source code |
| is.stanmvreg | Source code |
| is.stanmvreg_list | Source code |
| is.stanreg | Source code |
| is.stanreg_list | Source code |
| is.surv | Source code |
| is_binomial_ppc | Source code |
| is_clogit | Source code |
| is_discrete | Source code |
| is_null | Source code |
| is_polr | Source code |
| is_scobit | Source code |
| justRE | Source code |
| kfold.stanreg | Source code |
| kfold_and_reloo_data | Source code |
| laplace | Source code |
| lasso | Source code |
| last_dimnames | Source code |
| launch_shinystan.stanreg | Source code |
| linear_predictor | Source code |
| linear_predictor.default | Source code |
| linear_predictor.matrix | Source code |
| linkinv | Source code |
| linkinv.character | Source code |
| linkinv.family | Source code |
| linkinv.stanmvreg | Source code |
| linkinv.stanreg | Source code |
| list_nms | Source code |
| lkj | Source code |
| ll_args | Source code |
| ll_args.stanjm | Source code |
| ll_args.stanreg | Source code |
| ll_fun | Source code |
| log_clogit_denom | Source code |
| log_lik.stanjm | Source code |
| log_lik.stanmvreg | Source code |
| log_lik.stanreg | Source code |
| log_mean_exp | Source code |
| log_sum_exp | Source code |
| log_sum_exp2 | Source code |
| logit | Source code |
| loo.stanreg | Source code |
| loo_R2.stanreg | Source code |
| loo_compare.stanreg | Source code |
| loo_compare.stanreg_list | Source code |
| loo_linpred.stanreg | Source code |
| loo_model_formula | Source code |
| loo_model_weights.stanreg_list | Source code |
| loo_predict.stanreg | Source code |
| loo_predictive_interval.stanreg | Source code |
| make_assoc_parts | Source code |
| make_assoc_parts_for_stan | Source code |
| make_assoc_terms | Source code |
| make_b_nms | Source code |
| make_basehaz_X | Source code |
| make_eta | Source code |
| make_glmerControl | Source code |
| make_nlf_family | Source code |
| make_stan_summary | Source code |
| make_x_for_stan | Source code |
| make_y_for_stan | Source code |
| make_z_for_stan | Source code |
| matrix_of_uniforms | Source code |
| maybe_broadcast | Source code |
| mcmc_function_name | Source code |
| median_and_bounds | Source code |
| mh_step | Source code |
| mod2rx | Source code |
| model.frame.stanmvreg | Source code |
| model.frame.stanreg | Source code |
| model.matrix.stanreg | Source code |
| model_has_weights | Source code |
| n_distinct | Source code |
| names.stanreg_list | Source code |
| needs_chains | Source code |
| neg_binomial_2 | Source code |
| ngrps.stanmvreg | Source code |
| ngrps.stanreg | Source code |
| nlist | Source code |
| no_mean_PPD | Source code |
| nobs.stanmvreg | Source code |
| nobs.stanreg | Source code |
| normal | Source code |
| nsamples.stanreg | Source code |
| null_or_zero | Source code |
| optim_fn | Source code |
| pad_matrix | Source code |
| pad_reTrms | Source code |
| pairs.stanreg | Source code |
| pars_to_monitor | Source code |
| parse_assoc_data | Source code |
| parse_assoc_interactions | Source code |
| parse_assoc_sharedRE | Source code |
| parse_nlf_inputs | Source code |
| plot.predict.stanjm | Source code |
| plot.stanreg | Source code |
| plot.survfit.stanjm | Source code |
| plot_stack_jm | Source code |
| polr_linkinv | Source code |
| polr_yrep_to_numeric | Source code |
| posterior_epred.stanreg | Source code |
| posterior_interval.stanreg | Source code |
| posterior_linpred.stanreg | Source code |
| posterior_predict.stanmvreg | Source code |
| posterior_predict.stanreg | Source code |
| posterior_sample_size | Source code |
| posterior_survfit | Source code |
| posterior_traj | Source code |
| posterior_vs_prior | Source code |
| posterior_vs_prior.stanreg | Source code |
| pp_args | Source code |
| pp_b_ord | Source code |
| pp_binomial_trials | Source code |
| pp_check.stanreg | Source code |
| pp_data | Source code |
| pp_eta | Source code |
| pp_fun | Source code |
| pp_validate | Source code |
| predict.stanreg | Source code |
| predictive_error.matrix | Source code |
| predictive_error.ppd | Source code |
| predictive_error.stanmvreg | Source code |
| predictive_error.stanreg | Source code |
| predictive_interval.matrix | Source code |
| predictive_interval.ppd | Source code |
| predictive_interval.stanreg | Source code |
| prepare_data_table | Source code |
| print.compare_rstanarm_loos | Source code |
| print.prior_summary.stanreg | Source code |
| print.stanmvreg | Source code |
| print.stanreg | Source code |
| print.stanreg_list | Source code |
| print.summary.stanmvreg | Source code |
| print.summary.stanreg | Source code |
| print.survfit.stanjm | Source code |
| print_anova_table | Source code |
| prior_options | Source code |
| prior_summary.stanreg | Source code |
| product_normal | Source code |
| promote_to_factor | Source code |
| ps_check | Source code |
| psis.stanreg | Source code |
| qgumbel | Source code |
| ranef.stanmvreg | Source code |
| ranef.stanreg | Source code |
| ranef_template | Source code |
| recommend_QR_for_vb | Source code |
| recommend_exact_loo | Source code |
| recommend_kfold | Source code |
| recommend_reloo | Source code |
| reformulate_lhs | Source code |
| reformulate_rhs | Source code |
| reloo | Source code |
| rename_loos | Source code |
| rename_loos.stanreg | Source code |
| rename_loos.stanreg_list | Source code |
| rename_t_and_cauchy | Source code |
| residuals.stanmvreg | Source code |
| residuals.stanreg | Source code |
| return_intercept | Source code |
| rm_null | Source code |
| rm_stub | Source code |
| rmt | Source code |
| rolling_merge | Source code |
| se | Source code |
| se.stanmvreg | Source code |
| se.stanreg | Source code |
| select_median | Source code |
| set_geom_args | Source code |
| set_jm_sampling_args | Source code |
| set_lag | Source code |
| set_plotting_args | Source code |
| set_plotting_fun | Source code |
| set_prior_scale | Source code |
| set_sampling_args | Source code |
| sigma.stanmvreg | Source code |
| sigma.stanreg | Source code |
| simulate_b_pars | Source code |
| split_at_bars | Source code |
| split_cov_prior | Source code |
| stack_estimates | Source code |
| stan_aov | Source code |
| stan_betareg | Source code |
| stan_betareg.fit | Source code |
| stan_biglm | Source code |
| stan_biglm.fit | Source code |
| stan_clogit | Source code |
| stan_family_number | Source code |
| stan_gamm4 | Source code |
| stan_glm | Source code |
| stan_glm.fit | Source code |
| stan_glm.nb | Source code |
| stan_glmer | Source code |
| stan_glmer.nb | Source code |
| stan_jm | Source code |
| stan_jm.fit | Source code |
| stan_lm | Source code |
| stan_lm.fit | Source code |
| stan_lm.wfit | Source code |
| stan_lmer | Source code |
| stan_mvmer | Source code |
| stan_nlmer | Source code |
| stan_polr | Source code |
| stan_polr.fit | Source code |
| standardise_coef | Source code |
| stanjm_list | Source code |
| stanmvreg | Source code |
| stanmvreg_list | Source code |
| stanreg | Source code |
| stanreg_list | Source code |
| stanreg_list_append | Source code |
| stanreg_list_combine | Source code |
| stanreg_list_create | Source code |
| stanreg_list_families | Source code |
| stanreg_list_names | Source code |
| stop2 | Source code |
| strip_nms | Source code |
| student_t | Source code |
| subset_ids | Source code |
| substitute_b_pars | Source code |
| summarize_betareg_prior | Source code |
| summarize_glm_prior | Source code |
| summarize_jm_prior | Source code |
| summarize_lm_prior | Source code |
| summarize_polr_prior | Source code |
| summary.stanmvreg | Source code |
| summary.stanreg | Source code |
| supplied_together | Source code |
| supported_glm_links | Source code |
| terms.stanmvreg | Source code |
| terms.stanreg | Source code |
| transpose | Source code |
| trim_assoc | Source code |
| uapply | Source code |
| unclass_Surv_column | Source code |
| unpad_reTrms | Source code |
| unpad_reTrms.array | Source code |
| unpad_reTrms.default | Source code |
| unstandardise_qpts | Source code |
| unstandardise_qwts | Source code |
| update.stanjm | Source code |
| update.stanmvreg | Source code |
| update.stanreg | Source code |
| use_predvars | Source code |
| used.QR | Source code |
| used.optimizing | Source code |
| used.sampling | Source code |
| used.sparse | Source code |
| used.variational | Source code |
| validate_R2_location | Source code |
| validate_arg | Source code |
| validate_assoc | Source code |
| validate_assoc_with_grp | Source code |
| validate_data | Source code |
| validate_family | Source code |
| validate_famlink | Source code |
| validate_glm_formula | Source code |
| validate_glm_outcome_support | Source code |
| validate_grouping_factor | Source code |
| validate_k_threshold | Source code |
| validate_lag_assoc | Source code |
| validate_loos | Source code |
| validate_newdata | Source code |
| validate_newdatas | Source code |
| validate_observation_times | Source code |
| validate_offset | Source code |
| validate_parameter_value | Source code |
| validate_plotfun_for_opt_or_vb | Source code |
| validate_positive_scalar | Source code |
| validate_scale_assoc | Source code |
| validate_stanjm_object | Source code |
| validate_stanmvreg_object | Source code |
| validate_stanreg_object | Source code |
| validate_weights | Source code |
| vcov.stanreg | Source code |
| waic.stanreg | Source code |
| warn_data_arg_missing | Source code |
| xapply | Source code |
