API for stan-dev/rstanarm
Bayesian Applied Regression Modeling via Stan

Global functions
R2 Source code
STOP_arg Source code
STOP_arg_required_for_stanmvreg Source code
STOP_binomial Source code
STOP_combination_not_allowed Source code
STOP_dynpred Source code
STOP_if_stanmvreg Source code
STOP_jm_only Source code
STOP_no_draws Source code
STOP_no_var Source code
STOP_not_optimizing Source code
STOP_sampling_only Source code
STOP_stan_mvmer Source code
SW Source code
VarCorr.stanreg Source code
allow_special_parnames Source code
append_mvmer_famlink Source code
append_predvars_attribute Source code
array1D_check Source code
array2list Source code
array_else_double Source code
as.array.stanreg Source code
as.data.frame.stanreg Source code
as.data.frame.summary.stanreg Source code
as.matrix.stanreg Source code
autoscale_prior Source code
aux_name Source code
b_names Source code
b_names_M Source code
bayes_R2.stanreg Source code
beta_fam Source code
beta_names Source code
beta_phi_fam Source code
binom_y_prop Source code
broadcast_prior Source code
cauchy Source code
center_x Source code
chain_id_for_loo Source code
check_constant_vars Source code
check_for_aux Source code
check_for_intercept Source code
check_id_list Source code
check_id_var Source code
check_if_rescaled Source code
check_intercept_type Source code
check_missing_pars Source code
check_order_of_assoc_interactions Source code
check_pp_ids Source code
check_reTrms Source code
check_response_real Source code
check_rhats Source code
check_stanfit Source code
check_submodelopt2 Source code
check_submodelopt3 Source code
check_vars_are_included Source code
check_weights Source code
clogit_linpred_transform Source code
cnms Source code
cnms.stanmvreg Source code
cnms.stanreg Source code
coef.stanmvreg Source code
coef.stanreg Source code
coef_mer Source code
collapse_within_groups Source code
collapse_within_groups.default Source code
collapse_within_groups.matrix Source code
collect_nms Source code
collect_pars Source code
compare_models Source code
confint.stanreg Source code
convert_null Source code
decov Source code
default_stan_control Source code
dgumbel Source code
dirichlet Source code
dmt Source code
drop_attributes Source code
drop_intercept Source code
drop_redundant_dims Source code
evaluate_Sigma Source code
evaluate_log_basehaz Source code
evaluate_log_survival Source code
evaluate_log_survival.default Source code
evaluate_log_survival.matrix Source code
exclude_lp_and_ppd Source code
exponential Source code
extract_pars Source code
fac2bin Source code
family.stanmvreg Source code
family.stanreg Source code
family_plus_link Source code
fetch Source code
fetch_ Source code
fetch_array Source code
fitted.stanmvreg Source code
fitted.stanreg Source code
fixef.stanmvreg Source code
fixef.stanreg Source code
flist Source code
flist.stanmvreg Source code
flist.stanreg Source code
format_pars Source code
formula.stanmvreg Source code
formula.stanreg Source code
formula_mer Source code
formula_string Source code
generate_init_function Source code
get_M Source code
get_Sigma_nms Source code
get_basic_grp_info Source code
get_common_cnms Source code
get_common_flevels Source code
get_element Source code
get_extra_grp_info Source code
get_extrapolation_control Source code
get_idx_array Source code
get_m_stub Source code
get_model_data Source code
get_num_assoc_pars Source code
get_nvars_for_hs Source code
get_quadpoints Source code
get_scale_value Source code
get_stub Source code
get_time_seq Source code
get_x Source code
get_x.default Source code
get_x.gamm4 Source code
get_x.lmerMod Source code
get_x.stanmvreg Source code
get_y Source code
get_y.default Source code
get_y.stanmvreg Source code
get_y_new Source code
get_z Source code
get_z.lmerMod Source code
get_z.stanmvreg Source code
glmer_check Source code
gnore_nreps Source code
grep_for_pars Source code
groups Source code
handle_assocmod Source code
handle_basehaz Source code
handle_cov_prior Source code
handle_e_mod Source code
handle_glm_prior Source code
handle_weights Source code
handle_y_mod Source code
hash_y Source code
hs Source code
hs_plus Source code
is.beta Source code
is.binomial Source code
is.gamma Source code
is.gaussian Source code
is.ig Source code
is.jm Source code
is.kfold Source code
is.lmer Source code
is.loo Source code
is.mer Source code
is.mvmer Source code
is.nb Source code
is.nlmer Source code
is.poisson Source code
is.stanjm Source code
is.stanmvreg Source code
is.stanreg Source code
is.surv Source code
is.waic Source code
isFALSE Source code
is_binomial_ppc Source code
is_clogit Source code
is_discrete Source code
is_equal Source code
is_like_factor Source code
is_null Source code
is_polr Source code
is_scobit Source code
justRE Source code
kfold Source code
kfold_and_reloo_data Source code
laplace Source code
lasso Source code
last_dimnames Source code
launch_shinystan.stanreg Source code
linear_predictor Source code
linear_predictor.default Source code
linear_predictor.matrix Source code
linkinv Source code
linkinv.character Source code
linkinv.family Source code
linkinv.stanmvreg Source code
linkinv.stanreg Source code
list_nms Source code
lkj Source code
ll_Gamma_i Source code
ll_args Source code
ll_args.stanjm Source code
ll_args.stanreg Source code
ll_beta_i Source code
ll_binomial_i Source code
ll_clogit_i Source code
ll_fun Source code
ll_gaussian_i Source code
ll_inverse.gaussian_i Source code
ll_jm Source code
ll_long Source code
ll_neg_binomial_2_i Source code
ll_nlmer_i Source code
ll_poisson_i Source code
ll_polr_i Source code
ll_survival Source code
log_clogit_denom Source code
log_lik.stanjm Source code
log_lik.stanmvreg Source code
log_lik.stanreg Source code
log_mean_exp Source code
log_sum_exp Source code
log_sum_exp2 Source code
loo.stanreg Source code
loo_linpred.stanreg Source code
loo_model_formula Source code
loo_model_weights.stanreg_list Source code
loo_predict.stanreg Source code
loo_predictive_interval.stanreg Source code
make_assoc_parts Source code
make_assoc_parts_for_stan Source code
make_assoc_terms Source code
make_b_nms Source code
make_basehaz_X Source code
make_eta Source code
make_glmerControl Source code
make_nlf_family Source code
make_stan_summary Source code
make_x_for_stan Source code
make_y_for_stan Source code
make_z_for_stan Source code
matrix_of_uniforms Source code
max_treedepth Source code
maybe_broadcast Source code
mcmc_function_name Source code
median_and_bounds Source code
median_and_madsd Source code
mh_step Source code
mod2rx Source code
model.frame.stanmvreg Source code
model.frame.stanreg Source code
model.matrix.stanreg Source code
model_has_weights Source code
mu Source code
mu_beta Source code
n_distinct Source code
names.stanreg_list Source code
needs_chains Source code
neg_binomial_2 Source code
ngrps.stanmvreg Source code
ngrps.stanreg Source code
nlist Source code
no_mean_PPD Source code
nobs.stanreg Source code
normal Source code
null_or_zero Source code
onAttach Source code
onLoad Source code
optim_fn Source code
p Source code
pad_matrix Source code
pad_reTrms Source code
pairs.stanreg Source code
pars_to_monitor Source code
parse_assoc_data Source code
parse_assoc_interactions Source code
parse_assoc_sharedRE Source code
parse_nlf_inputs Source code
pgumbel Source code
phi_beta Source code
plot.predict.stanjm Source code
plot.stanreg Source code
plot.survfit.stanjm Source code
plot_nonlinear Source code
plot_stack_jm Source code
polr_linkinv Source code
polr_yrep_to_numeric Source code
posterior_interval.stanreg Source code
posterior_linpred.stanreg Source code
posterior_predict.stanmvreg Source code
posterior_predict.stanreg Source code
posterior_sample_size Source code
posterior_survfit Source code
posterior_traj Source code
posterior_vs_prior Source code
posterior_vs_prior.stanreg Source code
pp_Gamma Source code
pp_args Source code
pp_b_ord Source code
pp_beta Source code
pp_binomial Source code
pp_binomial_trials Source code
pp_check.stanreg Source code
pp_clogit Source code
pp_data Source code Source code
pp_data_jm Source code
pp_data_mer Source code
pp_data_mer_x Source code
pp_data_mer_z Source code
pp_data_nlmer Source code
pp_data_offset Source code
pp_eta Source code
pp_fun Source code
pp_gaussian Source code
pp_inverse.gaussian Source code
pp_neg_binomial_2 Source code
pp_poisson Source code
pp_polr Source code
pp_validate Source code
ppc_args Source code
ppc_function_name Source code
ppc_groupvar Source code
ppc_y_and_yrep Source code
predict.stanreg Source code
predictive_error.ppd Source code
predictive_error.stanmvreg Source code
predictive_error.stanreg Source code
predictive_interval.ppd Source code
predictive_interval.stanreg Source code
prepare_data_table Source code
print.compare_rstanarm_loos Source code
print.kfold Source code
print.prior_summary.stanreg Source code
print.stanmvreg Source code
print.stanreg Source code
print.summary.stanmvreg Source code
print.summary.stanreg Source code
print.survfit.stanjm Source code
print_anova_table Source code
print_covariance_prior Source code
print_scalar_prior Source code
print_vector_prior Source code
printfr Source code
prior_options Source code
prior_summary.stanreg Source code
product_normal Source code
promote_to_factor Source code
ps_check Source code
psis.stanreg Source code
qgumbel Source code
ranef.stanmvreg Source code
ranef.stanreg Source code
recommend_QR_for_vb Source code
recommend_exact_loo Source code
recommend_kfold Source code
recommend_reloo Source code
reformulate_lhs Source code
reformulate_rhs Source code
reloo Source code
rename_aux Source code
rename_e_aux Source code
rename_t_and_cauchy Source code
residuals.stanmvreg Source code
residuals.stanreg Source code
return_intercept Source code
rinvGauss Source code
rm_null Source code
rm_stub Source code
rmt Source code
rolling_merge Source code
se Source code
se.stanmvreg Source code
se.stanreg Source code
select_median Source code
set_geom_args Source code
set_jm_sampling_args Source code
set_lag Source code
set_nreps Source code
set_plotting_args Source code
set_plotting_fun Source code
set_prior_scale Source code
set_sampling_args Source code
sigma.stanmvreg Source code
sigma.stanreg Source code
simulate_b_pars Source code
split_at_bars Source code
split_cov_prior Source code
stack_estimates Source code
stan_aov Source code
stan_betareg Source code
stan_betareg.fit Source code
stan_biglm Source code
stan_biglm.fit Source code
stan_clogit Source code
stan_family_number Source code
stan_gamm4 Source code
stan_glm Source code
stan_glm.fit Source code
stan_glm.nb Source code
stan_glmer Source code
stan_glmer.nb Source code
stan_jm Source code
stan_jm.fit Source code
stan_lm Source code
stan_lm.fit Source code
stan_lm.wfit Source code
stan_lmer Source code
stan_mvmer Source code
stan_nlmer Source code
stan_polr Source code
stan_polr.fit Source code
standardise_coef Source code
stanjm_list Source code
stanmvreg Source code
stanmvreg_check Source code
stanmvreg_list Source code
stanreg Source code
stanreg_list Source code
stanreg_list_generator Source code
stop2 Source code
strip_nms Source code
student_t Source code
subset_ids Source code
substitute_b_pars Source code
summarize_betareg_prior Source code
summarize_glm_prior Source code
summarize_jm_prior Source code
summarize_lm_prior Source code
summarize_polr_prior Source code
summary.stanmvreg Source code
summary.stanreg Source code
supplied_together Source code
support_deprecated_prior_options Source code
supported_glm_links Source code
terms.stanmvreg Source code
terms.stanreg Source code
transpose Source code
trim_assoc Source code
uapply Source code
unclass_Surv_column Source code
unpad_reTrms Source code
unpad_reTrms.array Source code
unpad_reTrms.default Source code
unstandardise_qpts Source code
unstandardise_qwts Source code
update.stanjm Source code
update.stanmvreg Source code
update.stanreg Source code
use_predvars Source code
used.QR Source code
used.optimizing Source code
used.sampling Source code
used.sparse Source code
used.variational Source code
validate_R2_location Source code
validate_arg Source code
validate_assoc Source code
validate_assoc_with_grp Source code
validate_data Source code
validate_family Source code
validate_famlink Source code
validate_glm_formula Source code
validate_glm_outcome_support Source code
validate_grouping_factor Source code
validate_k_threshold Source code
validate_lag_assoc Source code
validate_loos Source code
validate_newdata Source code
validate_newdatas Source code
validate_observation_times Source code
validate_offset Source code
validate_parameter_value Source code
validate_plotfun_for_opt_or_vb Source code
validate_polr_x Source code
validate_positive_scalar Source code
validate_stanjm_object Source code
validate_stanmvreg_object Source code
validate_stanreg_object Source code
validate_weights Source code
vcov.stanreg Source code
waic.stanreg Source code
warn_data_arg_missing Source code
warning2 Source code
weighted Source code
xapply Source code
xdata Source code
xdata_beta Source code
zdata_beta Source code
stan-dev/rstanarm documentation built on Sept. 8, 2018, 9:54 a.m.