plotDEGStackedBar: Stacked bar plot of DEGs

In steinbaugh/DESeqAnalysis: Acid Genomics DESeq2 Analysis Utilities

Stacked bar plot of DEGs

Description

Stacked bar plot of DEGs

Usage

plotDEGStackedBar(object, ...)

## S4 method for signature 'DESeqAnalysis'
plotDEGStackedBar(
  object,
  i = NULL,
  direction = c("both", "up", "down"),
  orderBySize = FALSE,
  label = TRUE,
  flip = TRUE
)

Arguments

object	Object.
i	character, numeric, or NULL. Names or range of results. If set NULL, include all results.
direction	character(1). Include "both", "up", or "down" directions.
orderBySize	logical(1). Order contrasts by DEG set size.
label	logical(1). Label the number of DEGs per contrast on the plot.
flip	logical(1). Flip x and y axes. Recommended for plots containing many samples.
...	Additional arguments.

Value

ggplot.

Note

Updated 2022-05-18.

Examples

data(deseq)

## DESeqAnalysis ====
plotDEGStackedBar(deseq)

steinbaugh/DESeqAnalysis documentation built on June 25, 2022, 7:29 a.m.