plotDEGStackedBar: Stacked bar plot of DEGs

In steinbaugh/DESeqAnalysis: DESeq2 Analysis Utilities

Description

Stacked bar plot of DEGs

Usage

plotDEGStackedBar(object, ...)

## S4 method for signature 'DESeqAnalysis'
plotDEGStackedBar(
  object,
  i = NULL,
  direction = c("both", "up", "down"),
  orderBySize = FALSE,
  label = TRUE,
  fill = getOption(x = "acid.fill.discrete", default = getOption(x =
    "ggplot2.discrete.fill", default = AcidPlots::scale_fill_synesthesia_d())),
  flip = TRUE
)

Arguments

object	Object.
i	character, numeric, or NULL. Names or range of results. If set NULL, include all results.
direction	character(1). Include "both", "up", or "down" directions.
orderBySize	logical(1). Order contrasts by DEG set size.
label	logical(1). Label the number of DEGs per contrast on the plot.
fill	ggproto/ScaleDiscrete. Desired ggplot2 fill scale. Must supply discrete values. When set to NULL, the default ggplot2 color palette will be used. If manual color definitions are desired, we recommend using ggplot2::scale_fill_manual(). To set the discrete fill palette globally, use: options(acid.fill.discrete = ggplot2::scale_fill_viridis_d())
flip	logical(1). Flip x and y axes. Recommended for plots containing many samples.
...	Additional arguments.

Value

ggplot.

Note

Updated 2020-09-21.

Examples

data(deseq)

## DESeqAnalysis ====
plotDEGStackedBar(deseq)

steinbaugh/DESeqAnalysis documentation built on Oct. 15, 2020, 2:02 a.m.