Gene2Symbol-class: Gene-to-Symbol Mappings

Description Value Genome metadata Note Author(s) See Also Examples

Description

Gene-to-Symbol Mappings

Value

Gene2Symbol. Contains a DataFrame with geneID and geneName columns.

Genome metadata

We recommend slotting organism, genomeBuild, and ensemblRelease into S4Vectors::metadata().

Note

For some organisms, gene names and gene symbols do not map 1:1 (e.g. Homo sapiens and Mus musculus). Refer to the format argument here in the documentation for approaches that deal with this issue.

Author(s)

Michael Steinbaugh

See Also

help(topic = "makeGene2Symbol", package = "basejump.annotations").

Examples

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data(rse, package = "basejump.data")
x <- Gene2Symbol(rse)
print(x)

steinbaugh/basejump.classes documentation built on Nov. 5, 2018, 10:38 p.m.