Tx2Gene: Transcript-to-Gene Identifier Mappings

Description Usage Arguments Value Genome metadata Note See Also Examples

Description

Transcript-to-Gene Identifier Mappings

Usage

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Tx2Gene(object, ...)

## S4 method for signature 'DataFrame'
Tx2Gene(object)

## S4 method for signature 'GRanges'
Tx2Gene(object)

## S4 method for signature 'SummarizedExperiment'
Tx2Gene(object)

Arguments

object

Object.

...

Additional arguments.

Value

Tx2Gene. Contains a DataFrame with transcriptID and geneID columns.

Genome metadata

We recommend slotting organism, genomeBuild, and ensemblRelease into S4Vectors::metadata().

Note

No attempt is made to arrange the rows by transcript identifier.

See Also

help(topic = "makeTx2Gene", package = "basejump.annotations").

Examples

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## SummarizedExperiment ====
data(tx_se, package = "basejump.data")
x <- Tx2Gene(tx_se)
print(x)

steinbaugh/basejump.classes documentation built on Nov. 5, 2018, 10:38 p.m.