matchInterestingGroups: Match Interesting Groups

In steinbaugh/basejump.experiment: Experiments

Description

Match the user-defined interesting groups to the values slotted within a SummarizedExperiment object, and check that they are valid. Otherwise supports a missing interestingGroups argument, which will then use the interestingGroups() accessor function internally.

Usage

matchInterestingGroups(object, interestingGroups = NULL)

Arguments

object	SummarizedExperiment.
interestingGroups	character or NULL. Groups of interest that define the samples. If left unset, defaults to sampleName.

Value

character. Interesting groups.

Examples

data(rse, package = "basejump.data")
matchInterestingGroups(rse)

steinbaugh/basejump.experiment documentation built on Nov. 5, 2018, 10:36 p.m.