Files in steverozen/mSigBG
Separate Background Mutational Signature from Signature Due to a Mutagen

.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
R/LLHSpectrumNegBinom.R R/MakeBakgroundInfo.R R/MeanOfSpectraAsSig.R R/Plot1StackedSpectrum.R R/PlotSpectraAsSigsWtihUncertainty.R R/SeparateBackground.R R/SeparateSignatureAndSpectra.R R/data.R R/plot_stacked_sigs_by_exposure.R README.md
data-raw/.Rd2pdf29620/Rd2.tex
data-raw/HepG2_and_MCF10A_Cis.spectra.Rdata
data-raw/PrepareBackgroundSignaturePackageData.R
data-raw/all.separated.Rdata
data-raw/compare.experment.to.sbs31.35.r
data-raw/package.variable.source.data/Background_HepG2.csv
data-raw/package.variable.source.data/Background_MCF10A.csv
data-raw/platinum.Rmd
data-raw/platinum.html
data-raw/spectra/Background_HepG2.csv
data-raw/spectra/Background_MCF10A.csv
data-raw/spectra/HepG2_Car.csv
data-raw/spectra/HepG2_Oxa.csv
data-raw/spectra/HepG2_and_MCF10A_Cis.spectra.Rdata
data-raw/spectra/MCF10A_Car.csv
data-raw/vcfs/HepG2_Cis/HepG2_Cis_cl1.vcf.gz
data-raw/vcfs/HepG2_Cis/HepG2_Cis_cl2.vcf.gz
data-raw/vcfs/HepG2_Cis/HepG2_Cis_cl3.vcf.gz
data-raw/vcfs/HepG2_Cis/HepG2_Cis_cl4.vcf.gz
data-raw/vcfs/MCF10A_Cis/MCF10A_Cis_cl1.vcf.gz
data-raw/vcfs/MCF10A_Cis/MCF10A_Cis_cl2.vcf.gz
data-raw/vcfs/MCF10A_Cis/MCF10A_Cis_cl3.vcf.gz
data-raw/vcfs/MCF10A_Cis/MCF10A_Cis_cl4.vcf.gz
data-raw/vcfs/MCF10A_Cis/MCF10A_Cis_cl5.vcf.gz
data-raw/vcfs/MCF10A_Cis/MCF10A_Cis_cl6.vcf.gz
data/HepG2.background.spectra.rda
data/Mcf10A.background.spectra.rda
data/background.info.rda
data/example.spectra.rda
inst/WORDLIST
mSigBG.Rproj
mSigBG_1.0.0.pdf man/LLHOfSignatureGivenSpectrum.Rd man/LLHSpectrumNegBinom.Rd man/MakeBackgroundInfo.Rd man/MeanOfSpectraAsSig.Rd man/NegLLHOfSignature.Rd man/ObjFn1.Rd man/Plot1StackedSpectrum.Rd man/PlotSpectraAsSigsWithUncertainty.Rd man/SeparateSignatureAndSpectra.Rd man/SeparateSignatureFromBackground.Rd man/SeparateSignatureFromBackgroundOptions.Rd man/background.info.Rd man/background.spectra.Rd man/example.spectra.Rd tests/testthat.R tests/testthat/test-MakeBackgroundInfo.R tests/testthat/test-SeparateSignatureFromBackground.R
steverozen/mSigBG documentation built on Nov. 4, 2022, 10:58 a.m.