background.info | Specifications of background signatures |
background.spectra | Background spectra for the HepG2 and MCF-10A cell lines. |
example.spectra | Example spectra of cell lines exposed to cisplatin. |
LLHOfSignatureGivenSpectrum | The log likelihood of a *single* observed spectrum given the... |
LLHSpectrumNegBinom | Likelihood that 1 observed spectrum was generated from a... |
MakeBackgroundInfo | Estimate a background signature and its characteristics. |
MeanOfSpectraAsSig | Return the mean of multiple spectra as a signature. |
NegLLHOfSignature | Objective function for estimating a background signature from... |
ObjFn1 | Objective function for 'SeparateSignatureFromBackground'. |
Plot1StackedSpectrum | Plot a spectrum as a stacked bar chart |
PlotSpectraAsSigsWithUncertainty | Convert spectra to signatures and then plot mean with "error"... |
SeparateSignatureAndSpectra | Calculate the inferred target signature and inferred... |
SeparateSignatureFromBackground | Estimate a signature from experimentally exposed spectra... |
SeparateSignatureFromBackgroundOptions | Return a default value to pass as the 'm.opts' argument to... |
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