Man pages for steverozen/mSigBG
Separate Background Mutational Signature from Signature Due to a Mutagen

background.infoSpecifications of background signatures
background.spectraBackground spectra for the HepG2 and MCF-10A cell lines.
example.spectraExample spectra of cell lines exposed to cisplatin.
LLHOfSignatureGivenSpectrumThe log likelihood of a *single* observed spectrum given the...
LLHSpectrumNegBinomLikelihood that 1 observed spectrum was generated from a...
MakeBackgroundInfoEstimate a background signature and its characteristics.
MeanOfSpectraAsSigReturn the mean of multiple spectra as a signature.
NegLLHOfSignatureObjective function for estimating a background signature from...
ObjFn1Objective function for 'SeparateSignatureFromBackground'.
Plot1StackedSpectrumPlot a spectrum as a stacked bar chart
PlotSpectraAsSigsWithUncertaintyConvert spectra to signatures and then plot mean with "error"...
SeparateSignatureAndSpectraCalculate the inferred target signature and inferred...
SeparateSignatureFromBackgroundEstimate a signature from experimentally exposed spectra...
SeparateSignatureFromBackgroundOptionsReturn a default value to pass as the 'm.opts' argument to...
steverozen/mSigBG documentation built on Nov. 4, 2022, 10:58 a.m.