# (C) Copyright 2017 Sur Herrera Paredes
#
# This file is part of wheelP.
#
# wheelP is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# wheelP is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with wheelP. If not, see <http://www.gnu.org/licenses/>.
#' Calculate R-squared
#'
#' @export
strain_rsqrd <- function(Dat){
RES <- NULL
for(strain in unique(Dat$Strain)){
#strain <- unique(Dat$Strain)[2]
Dat.strain <- subset(Dat, Strain == strain)
Dat.strain <- aggregate(OD600 ~ rep + condition, FUN = sum, data = Dat.strain)
f1 <- OD600 ~ condition
m1 <- lm(OD600 ~ condition,data = Dat.strain)
m1.sum <- summary(m1)
r <- m1.sum$r.squared
Res <- data.frame(Strain = strain, r.squared = r)
RES <- rbind(RES,Res)
}
return(RES)
}
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