API for symbioticMe/proBatch
Tools for Batch Effects Diagnostics and Correction

Global functions
adjust_batch_trend Man page Source code
calculate_PVCA Source code
center_peptide_batch_medians Man page Source code
check_rare_levels Source code
color_list_to_df Man page Source code
correct_batch Man page
correct_batch_effects Man page Source code
correct_with_ComBat Man page Source code
create_peptide_annotation Man page Source code
date_to_sample_order Man page Source code
dates_to_posix Man page Source code
example_peptide_annotation Man page
example_proteome Man page
example_proteome_matrix Man page
example_sample_annotation Man page
fit_nonlinear Man page Source code
generate_colors_for_numeric Man page Source code
get_peptide_corr_df Man page Source code
get_sample_corr_distrib Man page Source code
loess_regression Source code
loess_regression_opt Source code
log_transform Man page Source code
long_to_matrix Man page Source code
map_factors_to_colors Source code
map_numbers_to_colors Source code
matrix_to_long Man page Source code
merge_rare_levels Man page Source code
normalize Man page
normalize_data Man page Source code
normalize_sample_medians Man page Source code
plot_PCA Man page Source code
plot_PVCA Man page Source code
plot_boxplot Man page Source code
plot_corr_matrix Man page Source code
plot_heatmap Man page Source code
plot_hierarchical_clustering Man page Source code
plot_iRT Man page Source code
plot_peptide_corr_distribution Man page Source code
plot_peptides_of_one_protein Man page Source code
plot_protein_corrplot Man page Source code
plot_sample_corr_distribution Man page Source code
plot_sample_corr_heatmap Man page Source code
plot_sample_mean Man page Source code
plot_sample_mean_or_boxplot Man page
plot_single_feature Man page Source code
plot_spike_in Man page Source code
plot_with_fitting_curve Man page Source code
proBatch Man page
proBatch-package Man page
quantile_normalize Man page Source code
sample_annotation_to_colors Man page Source code
symbioticMe/proBatch documentation built on Jan. 3, 2019, 4:17 p.m.