README.md

In syspremed/exploBATCH: Explore batch effect (exploBATCH) is a package for discovering and correcting for batch effect using an approach in Nyamundanda et al (2017).

exploBATCH

Explore batch effect (exploBATCH) is a package for discovering and correcting for batch effect using an approach in Nyamundanda et al (2017). Detailed discription on how to run exploBATCH is given in form of a vignette manual in folder named vignettes. Download the package to read the manual.

INSTALLING exploBATCH.

To install exploBATCH straight from syspremed github account you require devtools package. Otherwise, below are two lines of R codes to install exploBATCH.

require(devtools)

install_github("syspremed/exploBATCH")

Most problems associated with this installation is due to Rcpp package. Make sure you have up to date gfortran binary for mac, otherwise you can get a “-lgfortran” error or a “-lquadmath” error since few files are missing from their expected locations. and also update your Rcpp package. For updating gfortran or solving this problem follow this post here http://www.thecoatlessprofessor.com/programming/rcpp-rcpparmadillo-and-os-x-mavericks-lgfortran-and-lquadmath-error/

syspremed/exploBATCH documentation built on May 23, 2019, 9:34 a.m.