normalizeCoverage-methods: normalize read coverage between samples

Description Usage Arguments Value Author(s) Examples

Description

The function normalizes coverage values between samples using a scaling factor derived from differences between mean or median of coverage distributions

Usage

1
  normalizeCoverage(obj,method="median")

Arguments

obj

methylRawList object

method

a string "mean" or "median" which denotes median or mean should be used to calculate scaling factor. (Default:median)

Value

a methylRawList object

Author(s)

Altuna Akalin

Examples

1
2
data(methylKit)
newObj=normalizeCoverage(methylRawList.obj,method="median")

tectronics/methylkit documentation built on May 27, 2017, 4:14 a.m.