select-methods: selects rows from of methylKit objects

Description Usage Arguments Value Examples

Description

The function returns a subset of data contained in the methylKit objects.

Usage

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  select(x,i)

Arguments

x

an methylBase,methylRaw or methylDiff object

i

a numeric or logical vector. This vector corresponds to bases or regions contained in methylKit objects.The vector is used to subset the data.

Value

a methylBase,methylRaw or methylDiff object depending on the input object.

Examples

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data(methylKit)
 # selects first hundred rows, returns a methylRaw object
subset1=select(methylRawList.obj[[1]],1:100)

# selects first hundred rows, returns a methylBase object
subset2=select(methylBase.obj,1:100)

# selects first hundred rows, returns a methylDiff object
subset3=select(methylDiff.obj,1:100)

tectronics/methylkit documentation built on May 27, 2017, 4:14 a.m.