Description Usage Arguments Value Examples
The function summarizes methylated/unmethylated base counts over tilling windows accross genome. This function can be used when differential methylated analysis is preferable to tilling windows instead of base pairs.
1  tileMethylCounts(object,win.size=1000,step.size=1000,cov.bases=0)

object 

win.size 
an integer for the size of the tiling windows 
step.size 
an integer for the step size of tiling windows 
cov.bases 
minimum number of bases to be covered in a given window 
methylRaw
,methylBase
or
methylRawList
object
1 2 3 4  data(methylKit)
tiled.methylRaw=tileMethylCounts(object=methylRawList.obj,win.size=1000,
step.size=1000,cov.bases=0)

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