vignettes/longevityDrugs.R

In tgirke/longevityTools: Analysis tools for longevity research

## ----style, echo = FALSE, results = 'asis'-------------------------------
BiocStyle::markdown()
options(width=100, max.print=1000)
knitr::opts_chunk$set(
    eval=as.logical(Sys.getenv("KNITR_EVAL", "TRUE")),
    cache=as.logical(Sys.getenv("KNITR_CACHE", "TRUE")))

## ----setup, echo=FALSE, messages=FALSE, warnings=FALSE-------------------
suppressPackageStartupMessages({
    library(longevityTools) 
    library(ggplot2) }) 

## ----install, eval=FALSE-------------------------------------------------
## source("http://bioconductor.org/biocLite.R") # Sources the biocLite.R installation script
## biocLite("tgirke/longevityTools", build_vignettes=FALSE) # Installs package from GitHub

## ----documentation, eval=TRUE--------------------------------------------
library("longevityTools") 
library("ChemmineR") 

## ----load_sdf, eval=TRUE-------------------------------------------------
mypath <- system.file("extdata", "longevitydrugs.sdf", package="longevityTools")
sdfset <- read.SDFset(mypath)
data(sdfsample)
sdfsample
plot(sdfsample[1:4], print=FALSE)

## ----sessionInfo---------------------------------------------------------
sessionInfo()