R/data_doc_trrust_encode.R

In th789/ffl: Identifies Feed Forward Gene Networks

#' @title trrust database (TF-gene)
#' @description database of TF-gene targets
#' @format data.frame (9396 x 5)
#' \describe{
#' \item{TF}{transcription factor}
#' \item{gene}{gene}
#' \item{TRRUST_Regulation}{regulation}
#' \item{TRRUST_References_PMID}{reference}
#' \item{TRRUST}{column of 1's, used as counter when searching through this database}
#' }
"trrust"



#' @title encode database (TF-gene)
#' @description database of TF-gene targets
#' @format data.frame (1655383 x 5)
#' \describe{
#' \item{TF}{transcription factor}
#' \item{gene}{gene}
#' \item{ENCODE_TF_ID}{ENCODE TF ID}
#' \item{ENCODE_Gene_ID}{ENCODE gene ID}
#' \item{ENCODE}{column of 1's, used as counter when searching through this database}
#' }
"encode"