Files in thackl/gggenomes
A Grammar of Graphics for Comparative Genomics

.Rbuildignore
.github/.gitignore
.github/workflows/pkgdown.yaml
.github/workflows/rhub.yaml
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
R-deprecated/geom_gene3.R R-deprecated/geom_genecdsarrow.R R-deprecated/layout.R R-deprecated/modify.R R-deprecated/position_stack2.R R-deprecated/stat_offset.R R-deprecated/tbl_contig.R R-deprecated/tbl_genome.R R-deprecated/tbl_genomes.R R-deprecated/tbl_layout_contig.R R-deprecated/tbl_layout_feature.R R-deprecated/tbl_layout_link.R R/aaa.R R/add_tracks.R R/aes.R R/clusters.R R/coords.R R/data.R R/feats.R R/flip.R R/focus.R R/geom.R R/geom_coverage.R R/geom_feat.R R/geom_gene.R R/geom_gene2.R R/geom_gene_text.R R/geom_link.R R/geom_seq_break.R R/geom_variant.R R/geom_wiggle.R R/gggenomes.R R/global.R R/layout.R R/links.R R/pick.R R/position_strandpile.R R/position_variant.R R/pull_tracks.R R/ranges.R R/read.R R/read_alitv.R R/read_bed.R R/read_blast.R R/read_feats.R R/read_gbk.R R/read_gff3.R R/read_paf.R R/read_seqs.R R/read_vcf.R R/scale_x.R R/seqs.R R/set_class.R R/shift.R R/strand.R R/subfeats.R R/sublinks.R R/synteny_to_link.R R/tracks.R R/variant_scales.R R/vars.R R/write.R README.md
_pkgdown.yml
data-raw/emales.org
data-raw/emales.tgz
data/emale_ava.rda
data/emale_cogs.rda
data/emale_gc.rda
data/emale_genes.rda
data/emale_ngaros.rda
data/emale_prot_ava.rda
data/emale_seqs.rda
data/emale_tirs.rda
exec/gb2gff
exec/seq-len
gggenomes.Rproj
inst/extdata/cafeteria/CrBVI.fa.fai
inst/extdata/cafeteria/CrCflag.fa.fai
inst/extdata/cafeteria/CrE410P.fa.fai
inst/extdata/cafeteria/CrRCC970.fa.fai
inst/extdata/eden-utr.gff
inst/extdata/emales/emales-MCP.afa
inst/extdata/emales/emales-MCP.nwk
inst/extdata/emales/emales-cogs.tsv
inst/extdata/emales/emales-gc.bed
inst/extdata/emales/emales-ngaros.gff
inst/extdata/emales/emales-prot-ava.o6
inst/extdata/emales/emales-tirs.gff
inst/extdata/emales/emales.faa
inst/extdata/emales/emales.fna
inst/extdata/emales/emales.fna.seqkit.fai
inst/extdata/emales/emales.gff
inst/extdata/emales/emales.ids
inst/extdata/emales/emales.paf
inst/extdata/gorg/gorg-pads-defense.o6
inst/extdata/gorg/gorg.fna.fai
inst/extdata/gorg/gorg.gff
man/GeomFeatText.Rd man/add_seqs.Rd man/add_tracks.Rd man/anchor.Rd man/as_feats.Rd man/as_links.Rd man/as_seqs.Rd man/as_subfeats.Rd man/as_sublinks.Rd man/as_tracks.Rd man/check_strand.Rd man/combine_strands.Rd man/comma.Rd man/def_formats.Rd man/def_names.Rd man/dim.gggenomes_layout.Rd man/drop_feat_layout.Rd man/drop_layout.Rd man/drop_link_layout.Rd man/drop_seq_layout.Rd man/emale_ava.Rd man/emale_cogs.Rd man/emale_gc.Rd man/emale_genes.Rd man/emale_ngaros.Rd man/emale_prot_ava.Rd man/emale_seqs.Rd man/emale_tirs.Rd man/ex.Rd
man/figures/emales.png
man/figures/logo-slack.pdf
man/figures/logo-slack.png
man/figures/logo-smaller.png
man/figures/logo.png
man/figures/logo.svg
man/file_label.Rd man/flip.Rd man/flip_strand.Rd man/focus.Rd man/geom_bin_label.Rd man/geom_feat.Rd man/geom_feat_text.Rd man/geom_gene.Rd man/geom_gene_label.Rd man/geom_link.Rd man/geom_seq.Rd man/geom_seq_break.Rd man/geom_seq_label.Rd man/geom_variant.Rd man/geom_wiggle.Rd man/get_seqlen.Rd man/get_seqs.Rd man/gggenomes.Rd man/ggplot.gggenomes_layout.Rd man/has_vars.Rd man/if_reverse.Rd man/in_range.Rd man/introduce.Rd man/is_reverse.Rd man/layout.Rd man/layout_feats.Rd man/layout_genomes.Rd man/layout_links.Rd man/layout_seqs.Rd man/match_arg.Rd man/pick.Rd man/position_strand.Rd man/position_variant.Rd man/pull_track.Rd man/qw.Rd man/read_alitv.Rd man/read_bed.Rd man/read_blast.Rd man/read_context.Rd man/read_gbk.Rd man/read_gff3.Rd man/read_paf.Rd man/read_seq_len.Rd man/read_tracks.Rd man/read_vcf.Rd man/reexports.Rd man/require_vars.Rd man/scale_color_variant.Rd man/scale_x_bp.Rd man/set_class.Rd man/shift.Rd man/split_by.Rd man/strand_chr.Rd man/strand_int.Rd man/strand_lgl.Rd man/swap_if.Rd man/swap_query.Rd man/synteny_to_link.Rd man/theme_gggenomes_clean.Rd man/track_ids.Rd man/track_info.Rd man/track_nrows.Rd man/track_type.Rd man/track_types.Rd man/unnest_exons.Rd man/vars_track.Rd man/vars_track_error.Rd man/width.Rd man/write_gff3.Rd man/x.Rd
pkgdown/extra.css
pkgdown/extra.js
pkgdown/favicon/apple-touch-icon-120x120.png
pkgdown/favicon/apple-touch-icon-152x152.png
pkgdown/favicon/apple-touch-icon-180x180.png
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pkgdown/favicon/apple-touch-icon.png
pkgdown/favicon/favicon-16x16.png
pkgdown/favicon/favicon-32x32.png
pkgdown/favicon/favicon.ico
tests/testthat.R tests/testthat/test_vars.R vignettes/emales.Rmd
vignettes/emales/emales-p1.png
vignettes/emales/emales-p2.png
vignettes/emales/emales-p3.png
vignettes/emales/emales-p4.png
vignettes/emales/emales-p5.png
vignettes/emales/emales-p6.png
vignettes/emales/emales-p7.png
vignettes/gggenomes.Rmd
thackl/gggenomes documentation built on March 10, 2024, 7:26 a.m.