Files in thierrygosselin/pcadapt
Fast Principal Component Analysis for Outlier Detection

.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/pcadapt.R R/pcadaptClass.R R/pcadaptPool.R R/pcadaptUtils.R R/pcadaptggPlotting.R
README.html
README.md inst/doc/pcadapt.R inst/doc/pcadapt.Rmd
inst/doc/pcadapt.html
inst/extdata/geno3pops
inst/extdata/geno3pops.loadings
inst/extdata/geno3pops.maf
inst/extdata/geno3pops.pcadapt
inst/extdata/geno3pops.scores
inst/extdata/geno3pops.sigma
inst/extdata/geno3pops.zscores
inst/extdata/geno3pops20.loadings
inst/extdata/geno3pops20.maf
inst/extdata/geno3pops20.scores
inst/extdata/geno3pops20.sigma
inst/extdata/geno3pops20.zscores
inst/extdata/pool3pops
man/compute.pval.Rd man/corpca.Rd man/create.pcadapt.Rd man/get.pc.Rd man/get.pop.names.Rd man/get.score.color.Rd man/manhattan.plotting.Rd man/neutral.plotting.Rd man/pcadapt-package.Rd man/pcadapt.Rd man/plot.pcadapt.Rd man/pvalqq.plotting.Rd man/read.pcadapt.Rd man/score.plotting.Rd man/scree.plotting.Rd
pcadapt.Rproj
src/Makevars
src/Makevars.win
src/all2pcadapt.c
src/all2pcadapt.h
src/pcadapt.c
src/pcadapt.h
src/src_Lapack/blaswrap.h
src/src_Lapack/clapack.h
src/src_Lapack/d_sign.c
src/src_Lapack/dasum.c
src/src_Lapack/daxpy.c
src/src_Lapack/dbdsdc.c
src/src_Lapack/dbdsqr.c
src/src_Lapack/dcopy.c
src/src_Lapack/ddot.c
src/src_Lapack/dgebal.c
src/src_Lapack/dgebd2.c
src/src_Lapack/dgebrd.c
src/src_Lapack/dgelq2.c
src/src_Lapack/dgelqf.c
src/src_Lapack/dgemm.c
src/src_Lapack/dgemmlig.c
src/src_Lapack/dgemv.c
src/src_Lapack/dgeqr2.c
src/src_Lapack/dgeqrf.c
src/src_Lapack/dger.c
src/src_Lapack/dgesdd.c
src/src_Lapack/dgesvd.c
src/src_Lapack/dgetf2.c
src/src_Lapack/dgetrf.c
src/src_Lapack/dgetri.c
src/src_Lapack/dgetrs.c
src/src_Lapack/disnan.c
src/src_Lapack/dlabrd.c
src/src_Lapack/dlacpy.c
src/src_Lapack/dlae2.c
src/src_Lapack/dlaebz.c
src/src_Lapack/dlaed0.c
src/src_Lapack/dlaed1.c
src/src_Lapack/dlaed2.c
src/src_Lapack/dlaed3.c
src/src_Lapack/dlaed4.c
src/src_Lapack/dlaed5.c
src/src_Lapack/dlaed6.c
src/src_Lapack/dlaed7.c
src/src_Lapack/dlaed8.c
src/src_Lapack/dlaed9.c
src/src_Lapack/dlaeda.c
src/src_Lapack/dlaev2.c
src/src_Lapack/dlagtf.c
src/src_Lapack/dlagts.c
src/src_Lapack/dlaisnan.c
src/src_Lapack/dlamch.c
src/src_Lapack/dlamrg.c
src/src_Lapack/dlaneg.c
src/src_Lapack/dlange.c
src/src_Lapack/dlanst.c
src/src_Lapack/dlansy.c
src/src_Lapack/dlapy2.c
src/src_Lapack/dlar1v.c
src/src_Lapack/dlarf.c
src/src_Lapack/dlarfb.c
src/src_Lapack/dlarfg.c
src/src_Lapack/dlarft.c
src/src_Lapack/dlarnv.c
src/src_Lapack/dlarra.c
src/src_Lapack/dlarrb.c
src/src_Lapack/dlarrc.c
src/src_Lapack/dlarrd.c
src/src_Lapack/dlarre.c
src/src_Lapack/dlarrf.c
src/src_Lapack/dlarrj.c
src/src_Lapack/dlarrk.c
src/src_Lapack/dlarrr.c
src/src_Lapack/dlarrv.c
src/src_Lapack/dlartg.c
src/src_Lapack/dlaruv.c
src/src_Lapack/dlas2.c
src/src_Lapack/dlascl.c
src/src_Lapack/dlasd0.c
src/src_Lapack/dlasd1.c
src/src_Lapack/dlasd2.c
src/src_Lapack/dlasd3.c
src/src_Lapack/dlasd4.c
src/src_Lapack/dlasd5.c
src/src_Lapack/dlasd6.c
src/src_Lapack/dlasd7.c
src/src_Lapack/dlasd8.c
src/src_Lapack/dlasda.c
src/src_Lapack/dlasdq.c
src/src_Lapack/dlasdt.c
src/src_Lapack/dlaset.c
src/src_Lapack/dlasq1.c
src/src_Lapack/dlasq2.c
src/src_Lapack/dlasq5.c
src/src_Lapack/dlasq6.c
src/src_Lapack/dlasr.c
src/src_Lapack/dlasrt.c
src/src_Lapack/dlassq.c
src/src_Lapack/dlasv2.c
src/src_Lapack/dlaswp.c
src/src_Lapack/dlatrd.c
src/src_Lapack/dlazq3.c
src/src_Lapack/dlazq4.c
src/src_Lapack/dnrm2.c
src/src_Lapack/dorg2l.c
src/src_Lapack/dorg2r.c
src/src_Lapack/dorgbr.c
src/src_Lapack/dorgl2.c
src/src_Lapack/dorglq.c
src/src_Lapack/dorgql.c
src/src_Lapack/dorgqr.c
src/src_Lapack/dorgtr.c
src/src_Lapack/dorm2l.c
src/src_Lapack/dorm2r.c
src/src_Lapack/dormbr.c
src/src_Lapack/dorml2.c
src/src_Lapack/dormlq.c
src/src_Lapack/dormql.c
src/src_Lapack/dormqr.c
src/src_Lapack/dormtr.c
src/src_Lapack/drot.c
src/src_Lapack/drotg.c
src/src_Lapack/dscal.c
src/src_Lapack/dstebz.c
src/src_Lapack/dstedc.c
src/src_Lapack/dstein.c
src/src_Lapack/dstemr.c
src/src_Lapack/dsteqr.c
src/src_Lapack/dsterf.c
src/src_Lapack/dsvdc.c
src/src_Lapack/dswap.c
src/src_Lapack/dsyevr.c
src/src_Lapack/dsymv.c
src/src_Lapack/dsyr2.c
src/src_Lapack/dsyr2k.c
src/src_Lapack/dsytd2.c
src/src_Lapack/dsytrd.c
src/src_Lapack/dtrmm.c
src/src_Lapack/dtrmv.c
src/src_Lapack/dtrsm.c
src/src_Lapack/dtrti2.c
src/src_Lapack/dtrtri.c
src/src_Lapack/f2c.h
src/src_Lapack/fio.h
src/src_Lapack/i_nint.c
src/src_Lapack/idamax.c
src/src_Lapack/ieeeck.c
src/src_Lapack/ilaenv.c
src/src_Lapack/iparmq.c
src/src_Lapack/lpk.h
src/src_Lapack/lsame.c
src/src_Lapack/pow_dd.c
src/src_Lapack/pow_di.c
src/src_Lapack/pow_ii.c
src/src_Lapack/s_cat.c
src/src_Lapack/s_cmp.c
src/src_Lapack/s_copy.c
src/src_Lapack/sysdep1.h
src/src_Lapack/xerbla.c
src/src_convert/ancestrymap.c
src/src_convert/ancestrymap.h
src/src_convert/error_matrix.c
src/src_convert/error_matrix.h
src/src_convert/geno.c
src/src_convert/geno.h
src/src_convert/io_data_double.c
src/src_convert/io_data_double.h
src/src_convert/io_data_float.c
src/src_convert/io_data_float.h
src/src_convert/io_data_int.c
src/src_convert/io_data_int.h
src/src_convert/io_error.c
src/src_convert/io_error.h
src/src_convert/io_tools.c
src/src_convert/io_tools.h
src/src_convert/ped.c
src/src_convert/ped.h
src/src_convert/read.h
src/src_convert/register_convert.c
src/src_convert/register_convert.h
src/src_convert/vcf2geno.c
src/src_convert/vcf2geno.h
src/src_tools/Cov_line.c
src/src_tools/Cov_line.h
src/src_tools/Data__f.c
src/src_tools/Data__f.h
src/src_tools/linAlgebra.c
src/src_tools/linAlgebra.h
src/src_tools/matrix.c
src/src_tools/matrix.h
src/src_tools/random.c
src/src_tools/random.h
vignettes/pcadapt.R vignettes/pcadapt.Rmd
thierrygosselin/pcadapt documentation built on May 27, 2017, 6:34 a.m.