Global functions | |
---|---|
GenomeAdmixR | Man page |
GenomeAdmixR-package | Man page |
ancestry_module | Man page Source code |
calc_allele_frequencies | Source code Source code |
calculate_allele_frequencies | Man page Source code |
calculate_allele_spectrum_cpp | Source code |
calculate_average_ld | Man page Source code |
calculate_dist_junctions | Man page Source code |
calculate_fst | Man page Source code |
calculate_heterozygosity | Man page Source code |
calculate_heterozygosity_cpp | Source code |
calculate_ld | Man page Source code |
calculate_marker_frequency | Man page Source code |
check_for_bases | Source code |
check_initial_frequencies | Source code |
check_input_pop | Source code |
check_markers | Source code |
check_select_matrix | Source code |
combine_input_data | Man page Source code |
convert_dna_to_numeric | Source code |
convert_map_data_to_numeric | Source code |
convert_to_dna | Source code |
convert_to_numeric_matrix | Source code |
convert_vcf_to_alleles | Source code |
count_ab | Source code |
create_artificial_genomeadmixr_data | Man page Source code |
create_iso_female | Man page Source code |
create_loci_matrix | Source code |
create_pop_class | Source code |
create_random_markers | Source code |
create_recombination_map | Source code |
dgrp2.3R.5k.data | Man page |
findtype | Source code |
generate_output_list_one_pop | Source code |
generate_output_list_two_pop | Source code |
get_marker_range | Source code |
increase_ancestor | Source code |
iso_female_ancestry | Man page Source code |
iso_female_sequence | Man page Source code |
load_population | Man page Source code |
migration_settings | Man page Source code |
plink_to_genomeadmixr_data | Man page Source code |
plot.individual | Man page Source code |
plot_chromosome | Man page Source code |
plot_difference_frequencies | Man page Source code |
plot_dist_junctions | Man page Source code |
plot_frequencies | Man page Source code |
plot_joyplot_frequencies | Man page Source code |
plot_over_time | Man page Source code |
plot_start_end | Man page Source code |
population_to_vector | Source code |
print.genomeadmixr_data | Man page Source code |
print.individual | Man page Source code |
print.population | Man page Source code |
print_substitution_matrix | Source code |
read_input_data | Man page Source code |
read_ped | Source code |
read_vcf | Source code |
sample_output_matrix | Source code |
save_population | Man page Source code |
sequence_module | Man page Source code |
simulate_admixture | Man page Source code |
simulate_ancestry | Man page Source code |
simulate_ancestry_migration | Man page Source code |
simulate_ancestry_until | Source code |
simulate_cpp | Source code |
simulate_emp_cpp | Source code |
simulate_migration_cpp | Source code |
simulate_migration_emp_cpp | Source code |
simulate_sequence | Man page Source code |
simulate_sequence_migration | Man page Source code |
simulate_sequence_until | Source code |
simulation_data_to_genomeadmixr_data | Man page Source code |
simulation_data_to_genomeadmixr_data_cpp | Source code |
simulation_data_to_plink_cpp | Source code |
vcfR_to_genomeadmixr_data | Man page Source code |
vcf_to_matrix_cpp | Source code |
verify_genomeadmixr_data | Source code |
verify_individual | Source code |
verify_population | Source code |
verify_substitution_matrix | Source code |
write_as_plink | Man page Source code |
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