Files in thijsjanzen/GenomeAdmixR
Simulate Admixture of Genomes

.Rbuildignore
.gitattributes
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/test-coverage.yaml
.gitignore
DESCRIPTION
GenomeAdmixR.Rproj
NAMESPACE
R/RcppExports.R R/ancestry_module.R R/calculate_allele_frequencies.R R/calculate_frequencies.R R/calculate_fst.R R/calculate_heterozygosity.R R/calculate_ld.R R/calculate_marker_frequency.R R/create_input_data.R R/create_iso_female.R R/create_iso_female_data.R R/data.R R/joyplot_frequencies.R R/junctions.R R/migration_settings.R R/plot_chromosome.R R/plot_difference_frequencies.R R/plot_frequencies.R R/plot_over_time.R R/plot_start_end.R R/save_load.R R/sequence_module.R R/simulate_admixture.R R/simulate_ancestry.R R/simulate_ancestry_migration.R R/simulate_ancestry_until.R R/simulate_sequence.R R/simulate_sequence_migration.R R/simulate_sequence_until.R R/utilities.R README.md breakme.R
data/dgrp2.3R.5k.data.rda
man/GenomeAdmixR-package.Rd man/ancestry_module.Rd man/calculate_allele_frequencies.Rd man/calculate_average_ld.Rd man/calculate_dist_junctions.Rd man/calculate_fst.Rd man/calculate_heterozygosity.Rd man/calculate_ld.Rd man/calculate_marker_frequency.Rd man/combine_input_data.Rd man/create_artificial_genomeadmixr_data.Rd man/create_iso_female.Rd man/dgrp2.3R.5k.data.Rd man/iso_female_ancestry.Rd man/iso_female_sequence.Rd man/load_population.Rd man/migration_settings.Rd man/plink_to_genomeadmixr_data.Rd man/plot.individual.Rd man/plot_chromosome.Rd man/plot_difference_frequencies.Rd man/plot_dist_junctions.Rd man/plot_frequencies.Rd man/plot_joyplot_frequencies.Rd man/plot_over_time.Rd man/plot_start_end.Rd man/print.genomeadmixr_data.Rd man/print.individual.Rd man/print.population.Rd man/read_input_data.Rd man/save_population.Rd man/sequence_module.Rd man/simulate_admixture.Rd man/simulate_ancestry.Rd man/simulate_ancestry_migration.Rd man/simulate_sequence.Rd man/simulate_sequence_migration.Rd man/simulation_data_to_genomeadmixr_data.Rd man/vcfR_to_genomeadmixr_data.Rd man/write_as_plink.Rd
src/Fish.cpp
src/Fish.h
src/Fish_emp.h
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/helper_functions.cpp
src/helper_functions.h
src/random_functions.h
src/simulate.cpp
src/simulate_emp.cpp
src/simulate_migration.cpp
src/simulate_migration_emp.cpp
tests/testthat.R tests/testthat/test-LD.R tests/testthat/test-allele_frequencies.R tests/testthat/test-combined_input_data.R tests/testthat/test-fst.R tests/testthat/test-general_usage.R tests/testthat/test-isoFemales.R tests/testthat/test-joyplot.R tests/testthat/test-junctions.R tests/testthat/test-plink.R tests/testthat/test-save_load.R tests/testthat/test-selection.R tests/testthat/test-simulate_admixture.R tests/testthat/test-simulate_admixture_data.R tests/testthat/test-simulate_admixture_migration_data.R tests/testthat/test-simulate_admixture_until.R tests/testthat/test-simulate_migration.R tests/testthat/test-utilities.R vignettes/Demonstrate_isofemales.Rmd vignettes/Empirical_data.Rmd vignettes/Joyplots.Rmd vignettes/Visualization.Rmd
vignettes/Visualization.html
vignettes/Walkthrough.Rmd
thijsjanzen/GenomeAdmixR documentation built on Feb. 16, 2024, 7:27 p.m.