#testing generate_net, get_statistics, Jeong, Newman_corrected and PAFit
library(PAFit)
for (prob_m in c("TRUE", "FALSE"))
for (inc in c("TRUE","FALSE"))
for (log in c("TRUE", "FALSE"))
for (i in 1:3) {
net <- generate_net(N = 50, m = 10,prob_m = prob_m, increase = inc, log = log,
mode = i, s = 10)
for (bin in c("TRUE","FALSE"))
for (deg_thresh in c(0)) {
net_stats <- get_statistics(net,deg_threshold = deg_thresh, binning = bin, g = 10)
#check stats
if (sum(net_stats$m_t) != sum(net_stats$sum_m_k))
stop("wrong at m_t and sum_m_k")
if (sum(abs(colSums(net_stats$m_tk) - net_stats$sum_m_k)) != 0)
stop("wrong at m_tk and sum_m_k")
temp <- sapply(1:(net_stats$T-1),function(x) sum(net_stats$node_degree[x,] != -1))
if (sum(abs(rowSums(net_stats$n_tk) - (rowSums(net_stats$offset_tk) + temp))))
stop("wrong at node_degree, n_tk, offset_tk")
if (sum(net_stats$z_j) > sum(net_stats$m_t))
stop("wrong at z_j")
if (sum(net_stats$z_j) + sum(net_stats$offset_m_tk) - sum(net_stats$sum_m_k))
stop("Wrong at offset_m_tk")
net_stats <- get_statistics(net,deg_threshold = deg_thresh, binning = bin, g = 10,only_PA = TRUE)
net_stats <- get_statistics(net,deg_threshold = deg_thresh, binning = bin, g = 10,only_true_deg_matrix = TRUE)
}
}
net_stats <- get_statistics(net,deg_threshold = deg_thresh, binning = TRUE, g = 10)
print(net_stats)
summary(net_stats)
for (mode_f_value in c("Constant_PA", "Log_linear")) {
result_Jeong <- Jeong(net,net_stats, T_0_start = 0, T_0_end = 20, T_1_start = 30 , T_1_end = 40)
result_Jeong <- Jeong(net,net_stats, T_0_start = 0, T_0_end = 20, T_1_start = 30 , T_1_end = 40, interpolate = TRUE)
print(result_Jeong)
summary(result_Jeong)
plot(result_Jeong,net_stats)
plot(result_Jeong,net_stats, line = TRUE)
plot(result_Jeong,net_stats, high_deg = 5)
result_Newman <- Newman(net, net_stats)
result_Newman <- Newman(net, net_stats, interpolate = TRUE)
}
net_stats <- get_statistics(net,deg_threshold = deg_thresh, binning = FALSE, g = 10)
print(net_stats)
summary(net_stats)
for (mode_f_value in c("Constant_PA", "Log_linear")) {
result_Jeong <- Jeong(net,net_stats, T_0_start = 0, T_0_end = 20, T_1_start = 30 , T_1_end = 40)
result_Jeong <- Jeong(net,net_stats, T_0_start = 0, T_0_end = 20, T_1_start = 30 , T_1_end = 40, interpolate = TRUE)
print(result_Jeong)
summary(result_Jeong)
plot(result_Jeong,net_stats)
plot(result_Jeong,net_stats, line = TRUE)
plot(result_Jeong,net_stats, high_deg = 5)
result_Newman <- Newman(net, net_stats)
result_Newman <- Newman(net, net_stats, interpolate = TRUE)
}
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