In tidymass/tidymass: R packages for mass spectrometry data processing and analysis

knitr::opts_chunk$set(
  collapse = TRUE,
  echo = TRUE,
  comment = "#>",
  warning = FALSE,
  message = TRUE,
  out.width = "100%"
)

Intrudoction

This is a RMarkdown Template for tidymass

If you use tidymass in your publications, please cite this paper:

TidyMass: An Object-oriented Reproducible Analysis Framework for LC-MS Data.

Xiaotao Shen, Hong Yan, Chuchu Wang, Peng Gao, Caroline H. Johnson, Michael P. Snyder.

Web Link.

Thank you very much!

Create mass_data class object

We can create mass_data class object using create_mass_dataset() function.

library(tidymass)

data("expression_data")
data("sample_info")
data("sample_info_note")
data("variable_info")
data("variable_info_note")
object =
  create_mass_dataset(
    expression_data = expression_data,
    sample_info = sample_info,
    variable_info = variable_info,
    sample_info_note = sample_info_note,
    variable_info_note = variable_info_note
  )
object