README.md

In tkonopka/RGeneticThesaurus: Analysis of thesaurus-annotated genomic variants

RGeneticThesaurus

Analysis of thesaurus-annotated genomic variants in R

 

Thesaurus annotation is a method for elucidating ambiguities in calling genomic variants in genomic regions of low mappability.

To produce thesaurus annotations for a sample, see java software GeneticThesaurus on [github] (https://github.com/tkonopka/GeneticThesaurus) or sourceforge.

This repository contains a complementary R package - RGeneticThesaurus. The package provides a set of tools to manipulate thesaurus annotations in the R environment. Notably, it provides tools to compare sets of variant calls and to identify changes in allelic frequencies in matched samples.

See the package vignette for an example analysis.

 

tkonopka/RGeneticThesaurus documentation built on May 31, 2019, 3:44 p.m.