Files in tongyin9002/MICMIC
Methylation regulation network inference with Conditional Mutual information based PC-algorithem

DESCRIPTION
MICMIC tutorial.pdf MLH1_met_regulation.pdf
NAMESPACE
README.md
data/TCGA_HNSC_data.RData
data/TCGA_STAD_data.RData
inst/unitTests/test_MICMIC.R man/CMI.Rd man/CMI_met_cis_network.Rd man/HNSC_control_id.Rd man/HNSC_exp_data_matrix.Rd man/HNSC_met_data_matrix.Rd man/HNSC_ref_CpGs_bed.Rd man/HNSC_ref_gene_bed.Rd man/HNSC_sample_class.Rd man/HNSC_tumor_id.Rd man/MI.Rd man/MICMIC_plotting.Rd man/Network.Rd man/PC_para.Rd man/STAD_control_id.Rd man/STAD_exp_data_matrix.Rd man/STAD_met_data_matrix.Rd man/STAD_ref_CpGs_bed.Rd man/STAD_ref_gene_bed.Rd man/STAD_sample_class.Rd man/STAD_tumor_id.Rd man/TCGA_HNSC_data.Rd man/TCGA_STAD_data.Rd man/add_edge.Rd man/delete_edge.Rd man/entropy.Rd man/generate_regulator_info.Rd man/get_edge_number.Rd man/get_nearest_elements.Rd man/get_partners.Rd man/get_sharing_partners.Rd man/get_vertex_number.Rd man/merge_regulator_info.Rd man/read_adj_matrix.Rd man/test_vertex_pairs.Rd man/update_edge.Rd tests/runTests.R vignettes/MICMIC.Rmd
vignettes/MICMIC.html
vignettes/MICMIC.pdf
vignettes/MICMIC_files/MathJax(1).js
vignettes/MICMIC_files/MathJax.js
vignettes/MLH1_CMI_network.txt
vignettes/MLH1_Gviz_CpGsinfo.txt
vignettes/MLH1_Gviz_geneinfo.txt
vignettes/MLH1_MI_network.txt
vignettes/MLH1_associate_regulation.txt
vignettes/MLH1_direct_regulation.txt
vignettes/MLH1_indirect_regulation.txt
vignettes/MLH1_met_regulation.pdf
vignettes/MLH1_met_regulation.png
vignettes/MLH1_regulator_info.txt
vignettes/adj_log0.txt
vignettes/adj_log1.txt
vignettes/del_log0.txt
vignettes/del_log1.txt
vignettes/final_edges.txt
vignettes/mi_log0.txt
vignettes/mi_log1.txt
vignettes/rsconnect/documents/MICMIC.Rmd/rpubs.com/rpubs/Document.dcf
vignettes/testedges_log0.txt
vignettes/testedges_log1.txt
tongyin9002/MICMIC documentation built on Oct. 5, 2017, 3:12 p.m.