Files in tpq/propr
An R package to calculate proportionality and other measures for compositional data
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
NEWS.md
OLDNEWS.md
R/1-propr-OOP.R
R/1-propr-help.R
R/1-propr.R
R/1a-propr-backend.R
R/2-propd-OOP.R
R/2-propd-help.R
R/2-propd.R
R/2a-propd-backend.R
R/2b-propd-frontend.R
R/2c-propd-experimental.R
R/2d-propd-graflex.R
R/3-shared-getMatrix.R
R/3-shared-getRatios.R
R/3-shared-getResults.R
R/3-shared-updateCutoffs.R
R/3-shared-updatePermutes.R
R/4-aldex2propr.R
R/5-selectRatios.R
R/5-selectReference.R
R/9-global.R
R/RcppExports.R
README.Rmd
README.md
cran-comments.md
data-raw/data-abs.R
data-raw/data/Complex_annotation
data-raw/data/RNA.seq.csv
data-raw/data/microarray.csv
data/marg.abs.rda
inst/CITATION
man/aldex2propr.Rd
man/as_safe_matrix.Rd
man/basis_shrinkage.Rd
man/binTab.Rd
man/calculateOR.Rd
man/calculate_theta.Rd
man/compute_iqlr.Rd
man/getFDR.Rd
man/getMatrix.Rd
man/getOR.Rd
man/getRatios.Rd
man/getResults.Rd
man/index_reference.Rd
man/logratio.Rd
man/logratio_with_alpha.Rd
man/logratio_without_alpha.Rd
man/marg.abs.Rd
man/packageCheck.Rd
man/permuteOR.Rd
man/progress.Rd
man/propd.Rd
man/propr.Rd
man/ratios.Rd
man/runCutoff.Rd
man/runGraflex.Rd
man/runNormalization.Rd
man/runPostHoc.Rd
man/search_tree.Rd
man/selectRatios.Rd
man/selectReference.Rd
man/simple_zero_replacement.Rd
man/updateCutoffs.Rd
man/updatePermutes.Rd
old_tests/testthat.R
old_tests/testthat/test-Fstat.R
old_tests/testthat/test-aldex2propr.R
old_tests/testthat/test-getNormTheta.R
old_tests/testthat/test-multiomic.R
old_tests/testthat/test-propd.R
old_tests/testthat/test-propr-parallel.R
old_vignettes/a_introduction.Rmd
old_vignettes/b_visualization.Rmd
old_vignettes/d_advanced.Rmd
old_vignettes/e_differential.Rmd
old_vignettes/f_moderation.Rmd
old_vignettes/g_questions.Rmd
propr.Rproj
src/.gitignore
src/RcppExports.cpp
src/backend.cpp
src/backend.h
src/comparison.cpp
src/ctzRcpp.cpp
src/lr2propr.cpp
src/lrm.cpp
src/lrv.cpp
src/omega.cpp
tests/testthat.R
tests/testthat/test-GET-getRatios.R
tests/testthat/test-PROPD-theta.R
tests/testthat/test-PROPR-backend.R
tests/testthat/test-PROPR-clr-alr-vlr.R
tests/testthat/test-PROPR-pcorbshrink.R
tests/testthat/test-PROPR-phi-rho-phs-cor.R
tests/testthat/test-PROPR-updatepermutes.R
tests/testthat/test-RCPP-ctzRcpp.R
tests/testthat/test-RCPP-half2mat.R
tests/testthat/test-RCPP-wtmRcpp-wtvRcpp.R
