aerobe_list: Function to return susceptibility or resistance to...

Description Usage Arguments Value Examples

View source: R/abx_index.R

Description

Function to return susceptibility or resistance to antibiotics targeting aerobes

Usage

1
aerobe_list(abundance, lineage)

Arguments

abundance

A list of relative abundances of bacterial taxons for a single sample

lineage

Name of taxonomy lineage for each relative abundance in a sample (e.g. k__Bacteria; p__Bacteroidetes; c__Bacteroidia etc.)

Value

A dataframe of taxa abundances and whether they are susceptible or resistant to anti-aerobic antibiotics

Examples

1

tuv292/abx_idx documentation built on Jan. 18, 2021, 7:05 a.m.