anaerobes_index: Function to calculate antibiotics index targeting anaerobes...
In tuv292/abx_idx: Modeling the Susceptibility of a Bacterial Community to Antibiotics
Description
Usage
Arguments
Value
Examples
Description
Function to calculate antibiotics index targeting anaerobes such as Nitroimidazole
Usage
1
anaerobes_index(abundance, lineage)
Arguments
abundance
A list of relative abundances of bacterial taxons for a single sample
lineage
Name of taxonomy lineage for each relative abundance in a sample (e.g. k__Bacteria; p__Bacteroidetes; c__Bacteroidia etc.)
Value
The calculated antibiotics index for the sample
Examples
1
tuv292/abx_idx documentation built on Jan. 18, 2021, 7:05 a.m.
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Description Usage Arguments Value Examples
Description
Function to calculate antibiotics index targeting anaerobes such as Nitroimidazole
Usage
1 | anaerobes_index(abundance, lineage)
|
Arguments
abundance |
A list of relative abundances of bacterial taxons for a single sample |
lineage |
Name of taxonomy lineage for each relative abundance in a sample (e.g. k__Bacteria; p__Bacteroidetes; c__Bacteroidia etc.) |
Value
The calculated antibiotics index for the sample
Examples
1 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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