In tuxette/internet3D: gamma-package for internet3D

knitr::opts_chunk$set(eval = TRUE)

Scripts

This repository contains the scripts implementing for the network inference method of the article (Marti-Marimon et al, 2018). It can be installed with:

devtools::install_github("tuxette/internet3D")

The main functions of the package are build.network and bootstrap.build.

Supplementary files

After installation, supplementary files with the different networks described in the article are in:

system.file("results/network0.graphml", package = "internet3D")

(and similarly for network1, network2 and network3). They can be loaded within R with

library(igraph)
net0 <- system.file("results/network0.graphml", package = "internet3D")
net0 <- read_graph(net0, format = "graphml")
net0

The files are also directly accessible in this repository in inst/results and can be read with any standard tool for graph visualization (e.g., Gephi, https://gephi.org/)

Reference

Marti-Marimon M., Villa-Vialaneix N., Voillet V., Yerle-Bouissou M., Lahbib-Mansais Y., Liaubet L. (2018) A new approach of gene co-expression network inference reveals significant biological processes involved in porcine muscle development in late gestation. Preprint

tuxette/internet3D documentation built on May 8, 2019, 11:59 p.m.