README.md

In ueno-tr/flysleep: flysleep: Sleep analysis using DAM data.

flysleep

Analyze fly sleep based on DAM (Drosophila Activity Monitor) data using R.

Installation (Run as an Admin)

install.packages("devtools")
library("devtools")
devtools::install_github("ueno-tr/flysleep", force=TRUE)

Sample Data

https://drive.google.com/open?id=0B5fskUMfMyPJTGZLb2s0YjV5Z28

Usage

Analyze and output fly sleep

library(flysleep)
x <- DAMsleep1()

Sleep graph 3 days

DAMsleep2(x)

Sleep graph 1 day each (exclude 1 of 3 days) to compare LD, LL, DD conditions etc.

DAMsleep3(x, 1-3)

Delta sleep graph for sleep deprivation

SDgraph(x)

Analyze arousal threshold (stim: at 00min 1hr each, data: from XX:56 to XX:55)

responder()

Analyze rhythm of the activity

period()

ueno-tr/flysleep documentation built on Sept. 30, 2020, 8:31 p.m.