chord_mantavcf2df: Convert Manta VCF to data.frame

Description Usage Arguments Value Examples

View source: R/chord.R

Description

Converts a Manta VCF to a data.frame for processing with CHORD.

Usage

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Arguments

in_vcf

Manta VCF.

Value

Tibble with two columns: sv_type and sv_len (INFO/SVTYPE and INFO/SVLEN from VCF).

Examples

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in_vcf <- system.file("extdata/umccrise/sv/manta.vcf.gz", package = "gpgr")
d <- chord_mantavcf2df(in_vcf)

umccr/gpgr documentation built on Nov. 25, 2021, 1:15 p.m.