hrdetect_prep_cnv: Prepare PURPLE Somatic CNVs for HRDetect

Description Usage Arguments Value Examples

View source: R/hrdetect.R

Description

Prepares PURPLE somatic CNVs for use with HRDetect.

Usage

1

Arguments

x

Path to purple.cnv.somatic.tsv file.

nm

Sample name.

Value

Tibble with sample name and HRD-LOH index.

Examples

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x <- system.file("extdata/purple/purple.cnv.somatic.tsv", package = "gpgr")
(l <- hrdetect_prep_cnv(x, nm = "SampleA"))

umccr/gpgr documentation built on Nov. 25, 2021, 1:15 p.m.