hrdetect_read_snvindel_vcf: Read VCF with SNVs/INDELs for use with HRDetect

Description Usage Arguments Value Examples

View source: R/hrdetect.R

Description

Reads a VCF with SNVs/INDELs for use with HRDetect.

Usage

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Arguments

x

Path to VCF.

Value

List containing CHROM, POS, REF and ALT columns for SNVs and INDELs in separate tibbles.

Examples

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x <- system.file("extdata/umccrise/snv/somatic-ensemble-PASS.vcf.gz", package = "gpgr")
(l <- hrdetect_read_snvindel_vcf(x))

umccr/gpgr documentation built on Nov. 25, 2021, 1:15 p.m.