sig_count_indel: Count INDEL Contexts

Description Usage Arguments Value

View source: R/mutationalpatterns.R

Description

Counts INDEL Contexts.

Usage

1
sig_count_indel(vcf_gr, ref_genome)

Arguments

vcf_gr

GRanges containing all mutation types from a single sample.

ref_genome

The BSGenome reference genome to use.

Value

A tibble containing the number of INDELs per COSMIC context per gr.


umccr/gpgr documentation built on Nov. 25, 2021, 1:15 p.m.