sig_workflow_run: Run MutationalPatterns Workflow

Description Usage Arguments Details

View source: R/mutationalpatterns.R

Description

Runs a MutationalPatterns Workflow.

Usage

1
sig_workflow_run(vcf, sample_nm, ref_genome, outdir)

Arguments

vcf

VCF file with SNVs.

sample_nm

Sample name.

ref_genome

The BSGenome reference genome to use.

outdir

Directory path to output all the results to.

Details

Writes plots and signature contribution tables to outdir.


umccr/gpgr documentation built on Nov. 25, 2021, 1:15 p.m.