Files in uyedaj/bayou

Bayesian Fitting of Ornstein-Uhlenbeck Models to Phylogenies

.Rbuildignore

.gitignore

.travis.yml

DESCRIPTION

NAMESPACE

R/RcppExports.R R/bayou-custommodel-input.R R/bayou-deprecated.R R/bayou-likelihood.R R/bayou-mcmc-utilities.R R/bayou-mcmc.R R/bayou-models.R R/bayou-moves.R R/bayou-package.R R/bayou-plotting.R R/bayou-prior.R R/bayou-simulation.r R/bayou-steppingstone.R R/bayou-utilities.R R/bayou-weight_matrix.R R/conversion-utilities.R R/probability.R R/teaching-functions.R README.md

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inst/tests/test-data_load.r inst/tests/test-likelihood.r inst/tests/test-prior.r inst/tests/test-weight_matrix.r man/Lposterior.Rd man/OU.lik.Rd man/OU.repar.Rd man/OUphenogram.Rd man/OUwie2bayou.Rd man/QG.alpha.Rd man/QG.sig2.Rd man/bayou-deprecated.Rd man/bayou-package.Rd man/bayou.checkModel.Rd man/bayou.lik.Rd man/bayou.makeMCMC.Rd man/bayou2OUwie.Rd man/cdpois.Rd man/combine.chains.Rd man/dataSim.Rd man/dhalfcauchy.Rd man/dloc.Rd man/dsb.Rd man/gelman.R.Rd man/identifyBranches.Rd man/load.bayou.Rd man/make.powerposteriorFn.Rd man/make.prior.Rd man/make.refFn.Rd man/makeBayouModel.Rd man/makeTransparent.Rd man/model.OU.Rd man/parmap.W.Rd man/pars2simmap.Rd man/phenogram.density.Rd man/plot.bayouMCMC.Rd man/plot.ssMCMC.Rd man/plotBayoupars.Rd man/plotBranchHeatMap.Rd man/plotOUtreesim.Rd man/plotRegimes.Rd man/plotShiftSummaries.Rd man/plotSimmap.mcmc.Rd man/print.bayouFit.Rd man/print.bayouMCMC.Rd man/print.priorFn.Rd man/print.refFn.Rd man/print.ssMCMC.Rd man/priorSim.Rd man/pull.pars.Rd man/regime.plot.Rd man/set.burnin.Rd man/shiftSummaries.Rd man/simmap.W.Rd man/summary.bayouMCMC.Rd

src/Makevars

src/RcppExports.cpp

src/branches.cpp

src/threepoint.cpp

src/weightmatrix.cpp

tutorial.Rmd tutorial.md

tutorial.nb.html

uyedaj/bayou documentation built on Jan. 28, 2024, 5:09 a.m.