plotSignatureSNVCorrelation: plotSignatureSNVCorrelation

Description Usage Arguments Examples

View source: R/plotSignatureSNVCorrelation.R

Description

plotSignatureSNVCorrelation plots a correlation between specified Signature contributed SNVs and total SNVs. Returns of ggplot2 object to customization

Usage

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plotSignatureSNVCorrelation(subGroup, COSMIC_subgroupDF, yapsaCutOffObject,
  snvCounts, signatureToPlot)

Arguments

subGroup

Subgroup to plot the correlation.

COSMIC_subgroupDF

object returned by YAPSA function "make_subgroup_df"

yapsaCutOffObject

object returned by YAPSA function "LCD_complex_cutoff"

snvCounts

A data.frame with per-sample SNV counts with column names PID, SUBGROUP, count. This can be generated with function "creator_perSampleSNVCounts"

signatureToPlot

Specific signature to plot correlation. E.g. Signature.1 or Signature.3

Examples

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venuthatikonda/BRCAnessProject documentation built on March 22, 2018, 3:49 p.m.