wvioplot_list: wvioplot_list

In vertesy/MarkdownReports.v2.9.5: LEGACY VERSION - Generate Scientific Figures and Reports Easily

Description

Create and save violin plots as .pdf, in "OutDir". It requires (and calls) "vioplot" package. If mdlink =T, it inserts a .pdf and a .png link in the markdown report, set by "path_of_report". The .png version is not created, only the link is put in place, not to overwrite previous versions.

Usage

wvioplot_list(yalist, ..., coll = c(2:(length(yalist) + 1)),
  plotname = as.character(substitute(yalist)), sub = NULL,
  xlb = names(yalist), ylb = "", ylimm = F, incrBottMarginBy = 0,
  tilted_text = F, yoffset = 0, savefile = UnlessSpec("b.save.wplots"),
  w = UnlessSpec("b.defSize", 7), h = w, mdlink = ww.set.mdlink())

Arguments

yalist	Input list to be plotted.
...	Pass any other parameter of the corresponding plotting function (most of them should work).
plotname	Title of the plot (main parameter) and also the name of the file.
sub	Subtitle below the plot.
xlb	X-axis label.
ylb	Y-axis label.
ylimm	Manual y axis limits
incrBottMarginBy	Increase the blank space at the bottom of the plot. Use if labels do not fit on the plot.
tilted_text	Use 45 degree x-labels if TRUE. Useful for long, but not too many labels.
savefile	Save plot as pdf in OutDir, TRUE by default.
w	Width of the saved pdf image, in inches.
h	Height of the saved pdf image, in inches.
mdlink	Insert a .pdf and a .png image link in the markdown report, set by "path_of_report".
col	Color of the plot.l
tilted_text	Manual tuning of the Y-postion of the tilted text labels

Examples

wvioplot_list (yalist =  , ... =  , xlb = names(yalist), ylb =  , coll = c(1:length(yalist)), incrBottMarginBy = 0, w = 7, h = w, plotname = as.character(substitute(yalist)), tilted_text = F, mdlink = F)

vertesy/MarkdownReports.v2.9.5 documentation built on May 22, 2019, 4 p.m.