Files in vincent-dk/epiG
Statistical Inference of Epi-Allelic Patterns from Whole-Genome Bisulphite Sequencing Data

.Rbuildignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
R/epiG-config.R R/epiG-data.R R/epiG-fetch.R R/epiG-fit.R R/epiG-locate.R R/epiG-navigate.R R/epiG-summary.R R/rtools.R R/rtools_test.R README.md
appveyor.yml
check.R
codecov.yml
data/example.RData
epiG-manual.pdf
inst/extdata/GNAS_small.bai
inst/extdata/GNAS_small.bam
inst/extdata/dbsnp_135.hg19_GNAS.fa
inst/extdata/dbsnp_135.hg19_GNAS.fa.fai
inst/extdata/hg19_GNAS.fa
inst/extdata/hg19_GNAS.fa.fai
install.R man/BSeq.Rd man/NOMeSeq.Rd man/auto_config.Rd man/chain_info.Rd man/end.epiG.Rd man/epiG.Rd man/epiG_chunks.Rd man/epiG_config.Rd man/fetch_alt.Rd man/fetch_read_info.Rd man/fetch_reads.Rd man/fetch_ref.Rd man/file_info.Rd man/fit.Rd man/header_info.Rd man/length.epiG.Rd man/load_reads.Rd man/locate_C.Rd man/locate_CG.Rd man/locate_DGCH.Rd man/locate_GC.Rd man/locate_HCGD.Rd man/locate_mismatch.Rd man/nchain.Rd man/nchunks.Rd man/nread.Rd man/position_info.Rd man/print.epiG.Rd man/print.epiG.config.Rd man/print.epiG.model.Rd man/print.epiG.reads.Rd man/read_count.Rd man/read_depth.Rd man/read_fasta.Rd man/read_info.Rd man/read_info.epiG.Rd man/read_info.epiG_reads.Rd man/set_run_configuration.Rd man/sparseMatrix_from_C_format.Rd man/sparseMatrix_to_C_format.Rd man/start.epiG.Rd man/subregion.Rd man/test_rtools.Rd man/vector_search.Rd run-tests-valgrind.R
src/Makevars
src/alignment_data.h
src/arma_additions.h
src/bam_reader.h
src/chain_opt.h
src/chunked_chain_opt.h
src/epiG.cpp
src/epiG_algorithm_config.h
src/haplotype.h
src/math_tools.h
src/rinterface/epiG.h
src/rinterface/fetch.h
src/rtools.h
src/rtools/get_value.h
src/rtools/omp_rwarnings.h
src/rtools/rList.h
src/rtools/rObject_decl.h
src/rtools/rObject_def.h
src/rtools/test.h
src/samtools/LICENSE
src/samtools/bam.c
src/samtools/bam.h
src/samtools/bam_aux.c
src/samtools/bam_endian.h
src/samtools/bam_import.c
src/samtools/bam_index.c
src/samtools/bam_sort.c
src/samtools/bgzf.c
src/samtools/bgzf.h
src/samtools/faidx.c
src/samtools/faidx.h
src/samtools/khash.h
src/samtools/kseq.h
src/samtools/ksort.h
src/samtools/kstring.c
src/samtools/kstring.h
src/samtools/razf.c
src/samtools/razf.h
src/samtools/rdef.h
src/samtools/sam.c
src/samtools/sam.h
src/samtools/sam_header.c
src/samtools/sam_header.h
src/seq_tools.h
src/simple_timer.h
src/types.h
src/vector_search.h
tests/epiG-test-A.R tests/epiG-test-B.R tests/rtools_tests.R
vincent-dk/epiG documentation built on May 27, 2017, 8:53 p.m.