API for vjcitn/biocMultiAssay
Software for the integration of multi-omics experiments in Bioconductor

Global functions
$,MultiAssayExperiment-method Man page
$<-,MultiAssayExperiment-method Man page
DataFrame Man page
DollarNames.MultiAssayExperiment Source code
ExperimentList Man page Source code
ExperimentList-class Man page
MatchedAssayExperiment Man page Source code
MatchedAssayExperiment-class Man page
MultiAssayExperiment Man page Source code
MultiAssayExperiment-class Man page
MultiAssayExperiment-helpers Man page
MultiAssayExperiment-methods Man page
[,MultiAssayExperiment,ANY,ANY,ANY-method Man page
[,MultiAssayExperiment,ANY-method Man page
[[,MultiAssayExperiment,ANY,ANY-method Man page
[[<-,MultiAssayExperiment,ANY,ANY-method Man page
allIn Source code
anyReplicated Man page
anyReplicated,MultiAssayExperiment-method Man page
assay,ANY,missing-method Man page
assay,ExperimentList,character-method Man page
assay,ExperimentList,missing-method Man page
assay,ExperimentList,numeric-method Man page
assay,MultiAssayExperiment,character-method Man page
assay,MultiAssayExperiment,missing-method Man page
assay,MultiAssayExperiment,numeric-method Man page
assays,ExperimentList-method Man page
assays,MultiAssayExperiment-method Man page
c,MultiAssayExperiment-method Man page
checkEqualPrimaries Source code
checkExperimentList Source code
checkExperimentListNames Source code
checkGRL Source code
checkOverlapsAny Source code
checkPrimaryOrder Source code
checkSampleMapNamesClass Source code
checkSampleNames Source code
coerce Man page
coerce,List,ExperimentList-method Man page
coerce,MultiAssayExperiment,MatchedAssayExperiment-method Man page
coerce,list,ExperimentList-method Man page
coerceToExperimentList Source code
colData,MultiAssayExperiment-method Man page
colData<-,MultiAssayExperiment,DataFrame-method Man page
complete.cases,MultiAssayExperiment-method Man page
dimnames,ExperimentList-method Man page
dimnames,MultiAssayExperiment-method Man page
doMatching Source code
duplicated Man page
duplicated,MultiAssayExperiment-method Man page
experiments Man page
experiments,MultiAssayExperiment-method Man page
experiments<- Man page
experiments<-,MultiAssayExperiment,ExperimentList-method Man page
fillEmptyExps Source code
getHits Source code
getMethErr Source code
harmonize Source code
hasAssay Man page Source code
hasDataFrames Source code
hasOldAPI Source code
hasRowRanges Man page
hasRowRanges,ExperimentList-method Man page
hasRowRanges,MultiAssayExperiment-method Man page
intersectColumns Man page Source code
intersectRows Man page Source code
isEmpty,ExperimentList-method Man page
isEmpty,MultiAssayExperiment-method Man page
length,MultiAssayExperiment-method Man page
listToMap Man page Source code
longFormat Man page Source code
longFormatANY Source code
longFormatElist Source code
mapOrderPrimary Source code
mapToList Man page Source code
matchAddColData Source code
matchReorderSub Source code
matrixToList Source code
mergeMAE Source code
mergeReplicates Man page
mergeReplicates,ANY-method Man page
mergeReplicates,ExperimentList-method Man page
mergeReplicates,MultiAssayExperiment-method Man page
metadata,MultiAssayExperiment-method Man page
metadata<-,MultiAssayExperiment-method Man page
metadataCOLS Source code
miniACC Man page
names,MultiAssayExperiment-method Man page
names<-,MultiAssayExperiment-method Man page
prepMultiAssay Man page Source code
rearrangeMap Source code
reexports Man page
replicated Man page
replicated,MultiAssayExperiment-method Man page
rowIdx Source code
sEmpty Source code
sampleMap Man page
sampleMap,MultiAssayExperiment-method Man page
sampleMap<- Man page
sampleMap<-,MultiAssayExperiment,DataFrame-method Man page
sampleMapFromData Source code
sampleMapFromExisting Source code
show,ExperimentList-method Man page
show,MultiAssayExperiment-method Man page
splitArgs Source code
subset Man page
subsetBy Man page
subsetByAssay Man page
subsetByAssay,ExperimentList-method Man page
subsetByAssay,MultiAssayExperiment-method Man page
subsetByColData Man page
subsetByColData,MultiAssayExperiment,ANY-method Man page
subsetByColData,MultiAssayExperiment,character-method Man page
subsetByColumn Man page
subsetByColumn,ExperimentList,List-method Man page
subsetByColumn,ExperimentList,list-method Man page
subsetByColumn,ExperimentList,logical-method Man page
subsetByColumn,MultiAssayExperiment,ANY-method Man page
subsetByRow Man page
subsetByRow,ExperimentList,ANY-method Man page
subsetByRow,ExperimentList,List-method Man page
subsetByRow,ExperimentList,list-method Man page
subsetByRow,ExperimentList,logical-method Man page
subsetByRow,MultiAssayExperiment,ANY-method Man page
subsetCOLS Source code
subsetMultiAssayExperiment Source code
subsetROWS Source code
testMethodsTable Source code
tryRowRanges Source code
uniqueNamesInAssays Source code
uniqueSortIdentical Source code
updateObject,MultiAssayExperiment-method Man page
upsetSamples Man page Source code
validExperimentList Source code
validMatchedAssayExperiment Source code
validMultiAssayExperiment Source code
warnnomatch Source code
wideFormat Man page Source code
wideFormatANY Source code
vjcitn/biocMultiAssay documentation built on Oct. 10, 2018, 9:21 p.m.