In vjcitn/lungGen: Genomic contexts of lung-disease associated SNP
Introduction
We are using a variety of reference resources to
characterize genomic context of DNA variants.
lungGen is a prototypical interactive resource to
help explore context. Upon installation and
attachment of the package, invoking lungGen()
produces a browser page for interactive exploration.
Interface components
Overview
Sidebar panel allows selection of phenotype and gene
of interest. Phenotype selection filters the GWAS
catalog (in this release, limited to GWAS hits on chr17),
gene selection is used for transcript model display
to be discussed below.
Literature references
Note that a brief summary of all papers cited in the
GWAS catalog is provided on the front panel. This will
be expanded to support abstract retrieval. Locus-specific links to
pubmed are on the next tab.
Locus details
Epigenetic states enclosing loci
Transcript model with predicted phenorelevance scores
vjcitn/lungGen documentation built on May 24, 2019, 8:53 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Introduction
We are using a variety of reference resources to characterize genomic context of DNA variants.
lungGen is a prototypical interactive resource to
help explore context. Upon installation and
attachment of the package, invoking lungGen()
produces a browser page for interactive exploration.
Interface components
Overview
Sidebar panel allows selection of phenotype and gene of interest. Phenotype selection filters the GWAS catalog (in this release, limited to GWAS hits on chr17), gene selection is used for transcript model display to be discussed below.
Literature references
Note that a brief summary of all papers cited in the GWAS catalog is provided on the front panel. This will be expanded to support abstract retrieval. Locus-specific links to pubmed are on the next tab.
Locus details
Epigenetic states enclosing loci
Transcript model with predicted phenorelevance scores
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.