README.md

In vnminin/indorigin: Testing independent/separate origins hypothesis using Bayes factors

indorigin

R package for testing how many times a trait of interest was regained during evolution (aka independent/separate origin hypotheses).

installation

if you don't have devtools package installed, execute

install.packages("devtools") 

To install the indorigin package, run

library(devtools)
install_github("vnminin/indorigin",build_vignettes=TRUE) 

getting started with the package

Load the package and open the package vignette:

library(indorigin)
vignette("indorigin_methods")

Implementation and illustrations section of the vignette goes through two simulated and one real data example.

References

M. Sabrina Pankey, Vladimir N. Minin, Greg C. Imholte, Marc A. Suchard, and Todd H. Oakley. Predictable transcriptome evolution in the convergent and complex bioluminescent organs of squid, PNAS 2014; published ahead of print October 21, 2014, doi:10.1073/pnas.1416574111.

vnminin/indorigin documentation built on May 3, 2019, 6:17 p.m.